Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20037
         (704 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    24   1.0  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    23   1.8  
AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6 prot...    23   3.2  
AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxida...    21   9.8  

>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +3

Query: 249 PT*RSVFDTTKKVLVEFYAPWCGHCKQLVPIYDKLGE 359
           P   +V D    +  +F+A W G   +  P+Y  + E
Sbjct: 188 PAMSNVLDIINVMTYDFHAMWAGFTAENSPLYGGVNE 224


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = +3

Query: 213 TGPPNPSKCSSPPT 254
           TG P PS  +SPPT
Sbjct: 222 TGIPTPSTSASPPT 235


>AY873916-1|AAW67572.1|  377|Tribolium castaneum chitinase 6
           protein.
          Length = 377

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/32 (28%), Positives = 14/32 (43%)
 Frame = +3

Query: 249 PT*RSVFDTTKKVLVEFYAPWCGHCKQLVPIY 344
           P   +V D    +  +F+  W G   Q  P+Y
Sbjct: 187 PAMSNVLDVINVMTYDFHGSWAGVTAQNSPLY 218


>AY884063-1|AAX84204.1|  682|Tribolium castaneum pro-phenol oxidase
           subunit 1 protein.
          Length = 682

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +1

Query: 616 TWPRRPLMRLP 648
           TWP RP+ ++P
Sbjct: 281 TWPARPVNQVP 291


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,261
Number of Sequences: 336
Number of extensions: 2708
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)