Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20036
         (591 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc...    29   0.38 
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    27   2.7  
SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4 desaturase...    26   3.6  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    26   3.6  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   4.7  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   6.2  
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    25   8.3  

>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
           Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 503 DLEVNSVVFQHGGKLPGDFLAGFVFGVTECNFVV 402
           DLE N +V Q+ G   G+FL G  FG  +  FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +1

Query: 115 ELYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 231
           ++++++V+  Y   A+    EYL+EK    I +  K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595


>SPBC3B8.07c |dsd1|SDCB3B8.07c|dihydroceramide delta-4
           desaturase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 362

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 243 EHHGFAYQLWTKDGK 287
           EHH F Y  WT+ GK
Sbjct: 292 EHHDFPYVAWTRIGK 306


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = -2

Query: 197 SPFFSFRYSEHLAIAVSYSPMTTLIYSSPP 108
           +PFF   +S HL    S S  + + YS PP
Sbjct: 343 APFFPLGFSPHLNDESSRSRWSNISYSPPP 372


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 351 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 443
           L+ K+D  A K+ DQ  H K+     +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1647

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/39 (30%), Positives = 23/39 (58%)
 Frame = -2

Query: 401  VLLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 285
            V+L+  + G +  +   L  LL +D +++  +V FDDF+
Sbjct: 1284 VVLLQDIHGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 18/73 (24%), Positives = 35/73 (47%)
 Frame = -2

Query: 362 FVYELDSLLGEDHSKLDGEVRFDDFLSILCP*LVGESMVFLLPFSIRRFTASLITSPFFS 183
           F+ E+D LL   + K + E+    FLS +     GE  + +  F ++R     + SP   
Sbjct: 16  FLAEIDELLTIPYEKNELEIGVSKFLSFINK--YGEPYL-ITEFQLQRCMEKFLNSPL-- 70

Query: 182 FRYSEHLAIAVSY 144
           ++  E+  +++ Y
Sbjct: 71  YQLDENAVLSIFY 83


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,492,852
Number of Sequences: 5004
Number of extensions: 52316
Number of successful extensions: 208
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)