Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20036
         (591 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical...    32   0.35 
Z99279-5|CAB16497.3|  262|Caenorhabditis elegans Hypothetical pr...    27   7.5  
Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U80447-7|AAB37811.1|  518|Caenorhabditis elegans Hypothetical pr...    27   7.5  
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical...    27   7.5  
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical...    27   7.5  
AF047659-5|AAC04429.1|  347|Caenorhabditis elegans Hypothetical ...    27   7.5  

>AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical
           protein Y71H2B.1 protein.
          Length = 143

 Score = 31.9 bits (69), Expect = 0.35
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +1

Query: 118 LYMSVVIGEYETAIA-KCSEYLKEKKGEVIKEAVKRLIE 231
           LYM   +G+Y+   A KC +Y K+  G+   EA++  I+
Sbjct: 87  LYMQATVGDYDGNTALKCGQYWKKHSGKTQIEAIREYIK 125


>Z99279-5|CAB16497.3|  262|Caenorhabditis elegans Hypothetical
           protein Y57G11A.4 protein.
          Length = 262

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/71 (21%), Positives = 33/71 (46%)
 Frame = +3

Query: 363 RDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKIMSPRTNST*SSIT 542
           RD H+  +  ++  N + FG++ +  +      F P +  NR+  + M P  +   S+  
Sbjct: 193 RDSHSFPITSEEMFNPVTFGNNFEHPT-----GFAPKINTNRIEKRPMRPTESPKVSASL 247

Query: 543 RKVLVMTVSFY 575
             ++   +SF+
Sbjct: 248 VSLIPFVLSFF 258


>Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical
           protein F25H5.7 protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 121 YMSVVIGEYETAIAKCSEYLKEKKGEVIK 207
           Y+ ++   +E  + KC+ Y  EK GEV+K
Sbjct: 270 YVLMLCTLFEGGVEKCALYYPEKLGEVVK 298


>U80447-7|AAB37811.1|  518|Caenorhabditis elegans Hypothetical
           protein F55F8.7 protein.
          Length = 518

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +1

Query: 121 YMSVVIGEYETAIAKCSEYLKEKKGEVIK 207
           Y+ ++   +E  + KC+ Y  EK GEV+K
Sbjct: 271 YVLMLCTLFEGGVEKCALYYPEKLGEVVK 299


>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform b
            protein.
          Length = 1250

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
 Frame = +3

Query: 324  VIFTEQTVKLIN-----KRDHHALKLIDQQNHNKIAFGDSK---DKTSKKVSWKFTPVLE 479
            ++ T++ +K++N     +R  H L L      +KI F D     D +   + W  +P LE
Sbjct: 911  IVQTDKKLKVVNVATELERVDHILPLRYATISHKIEFSDEIKFIDGSKTNLQWTLSPPLE 970

Query: 480  NNRVYFKI 503
               V FK+
Sbjct: 971  AGTVLFKV 978


>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform a
            protein.
          Length = 2456

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
 Frame = +3

Query: 324  VIFTEQTVKLIN-----KRDHHALKLIDQQNHNKIAFGDSK---DKTSKKVSWKFTPVLE 479
            ++ T++ +K++N     +R  H L L      +KI F D     D +   + W  +P LE
Sbjct: 911  IVQTDKKLKVVNVATELERVDHILPLRYATISHKIEFSDEIKFIDGSKTNLQWTLSPPLE 970

Query: 480  NNRVYFKI 503
               V FK+
Sbjct: 971  AGTVLFKV 978


>AF047659-5|AAC04429.1|  347|Caenorhabditis elegans Hypothetical
           protein K07H8.8 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = +3

Query: 255 FAYQLWTKDGKEIVKSYFPIQFRVIFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKD 434
           FA Q W  D K  +K+   IQ+    TE+   + N       + + ++N N++    SK 
Sbjct: 244 FAPQTWYCDMKNNIKNSTVIQYSSTGTEKIKMIDNLLTVFKNRNVPEENLNEVREELSKG 303

Query: 435 KTSKKVS 455
           KT    S
Sbjct: 304 KTQHSTS 310


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,883,455
Number of Sequences: 27780
Number of extensions: 297115
Number of successful extensions: 1066
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1011
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1066
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1247656244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)