Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20034
         (519 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    21   6.5  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    21   6.5  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           21   8.7  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +2

Query: 380 KDVDGLNTINEGRVXVGDLSGXIPCTPAGCVELIXKTGVTIAGK 511
           KD+     I    + V DL   + CTP   VE+  +    + G+
Sbjct: 97  KDMRNSTNIFLVNLSVADLMVLLVCTPTVLVEVNSRPETWVLGR 140


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = +2

Query: 380 KDVDGLNTINEGRVXVGDLSGXIPCTPAGCVELIXKTGVTIAGK 511
           KD+     I    + V DL   + CTP   VE+  +    + G+
Sbjct: 97  KDMRNSTNIFLVNLSVADLMVLLVCTPTVLVEVNSRPETWVLGR 140


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -3

Query: 148 PTCTMASLGSKPDHFERS 95
           PTC+ AS    P H   S
Sbjct: 194 PTCSEASSSPTPSHSSES 211


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 101,516
Number of Sequences: 336
Number of extensions: 1844
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 12468463
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)