Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20034
         (519 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces ...    79   3e-16
SPBC2G2.08 |ade9||C-1-tetrahydrofolatesynthase/methylenetetrahyd...    64   1e-11
SPBC1711.04 |||methylenetetrahydrofolate reductase |Schizosaccha...    40   3e-04
SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch...    28   0.96 
SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog, Rhp...    25   9.0  

>SPBC839.16 |||C-1-tetrahydrofolate synthase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 937

 Score = 79.4 bits (187), Expect = 3e-16
 Identities = 35/76 (46%), Positives = 51/76 (67%)
 Frame = +3

Query: 24  MAQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGRXDSNVYIRMKLKAAEK 203
           MA ++ G  +A  +  +LR+Q++ ++S    F   L I+QVGGR DSNVY+RMK +AA +
Sbjct: 1   MALLLEGTSLARKVREELREQISSIKSVDPYFNVSLKIIQVGGREDSNVYVRMKTRAANE 60

Query: 204 IGIAAEHIRLPRDITE 251
            GI+ EH+  P DITE
Sbjct: 61  AGISCEHVNFPEDITE 76



 Score = 59.7 bits (138), Expect = 3e-10
 Identities = 33/86 (38%), Positives = 49/86 (56%), Gaps = 1/86 (1%)
 Frame = +2

Query: 257 LLAKITSLNESPSVHGIIVQMPXXSDHAXDAHRVTDAVSPDKDVDGLNTINEGRVXVGDL 436
           LL  I   NE P+VHGIIVQ+P  + H  +   +T+AV+P+KDVDG    N G++   + 
Sbjct: 79  LLLAIKGFNEDPTVHGIIVQLPLPA-HINE-QIITEAVAPEKDVDGFCETNLGKLTKREG 136

Query: 437 SGXI-PCTPAGCVELIXKTGVTIAGK 511
                 CTP G + ++   G+ + GK
Sbjct: 137 QPLFTACTPKGIMCILKHYGINVQGK 162


>SPBC2G2.08 |ade9||C-1-
           tetrahydrofolatesynthase/methylenetetrahydrofolatedehydr
           ogenase/methylenetetrahydrofolatecyclohydrolase/formylte
           trahydrofolatesynthetase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 969

 Score = 64.1 bits (149), Expect = 1e-11
 Identities = 32/73 (43%), Positives = 47/73 (64%)
 Frame = +3

Query: 27  AQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGRXDSNVYIRMKLKAAEKI 206
           A I++G  +A  ++  + ++V  L++K   F+P LAIVQVG R DSNVY+RMK KAA  +
Sbjct: 33  ANILNGKLLARKLQRSVAEEVQALKAKDRNFKPALAIVQVGKREDSNVYVRMKEKAARLV 92

Query: 207 GIAAEHIRLPRDI 245
           GI  ++   P  I
Sbjct: 93  GIDFKYCPFPETI 105



 Score = 62.5 bits (145), Expect = 4e-11
 Identities = 31/85 (36%), Positives = 50/85 (58%), Gaps = 1/85 (1%)
 Frame = +2

Query: 257 LLAKITSLNESPSVHGIIVQMPXXSDHAXDAHRVTDAVSPDKDVDGLNTINEGRVXVGDL 436
           LL ++  LN+  +VHG++VQ+P    H  +   VT++++P KDVDG    N G +   D 
Sbjct: 110 LLHELKKLNDDHTVHGVLVQLPLPK-HLNE-RTVTESITPPKDVDGFGAFNIGLLAKNDA 167

Query: 437 SG-XIPCTPAGCVELIXKTGVTIAG 508
           +    PCTP G +EL+    +++AG
Sbjct: 168 TPIHYPCTPKGIMELLKDNKISVAG 192


>SPBC1711.04 |||methylenetetrahydrofolate reductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 320

 Score = 39.5 bits (88), Expect = 3e-04
 Identities = 28/84 (33%), Positives = 42/84 (50%), Gaps = 8/84 (9%)
 Frame = +2

Query: 269 ITSLNESPSVHGIIVQMPXXSDHAXDAHRVTDAVSPDKDVDGL------NTINEGRVXVG 430
           I   N  PSV+GI++  P  +D   D + +   VSPDKDV+GL      N  +  R    
Sbjct: 85  IVEANNDPSVNGIMIYFPVFND-GQDQY-LQQVVSPDKDVEGLCHKYVMNMYHNIRHLDP 142

Query: 431 DLS--GXIPCTPAGCVELIXKTGV 496
           + +    +PCTP   V+++   GV
Sbjct: 143 EKTKKSILPCTPLAIVKILEYLGV 166


>SPAC14C4.08 |mug5||meiotically upregulated gene
           Mug5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 179

 Score = 27.9 bits (59), Expect = 0.96
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
 Frame = +3

Query: 111 SGFEPRLAIVQ-VGGRXDSNVYIRMKLKAAEKI 206
           SGFE R+ I++ +    DSN+YIR+K +   K+
Sbjct: 11  SGFENRIKILEDLMNEFDSNLYIRLKRECDFKL 43


>SPBC342.05 |crb2|rhp9, rhp9|DNA repair protein RAD9 homolog,
           Rhp9|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 778

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +1

Query: 208 VSPPNISAYQGTSLK*AVSKNHESERISFRSRH 306
           V+P NI  +QG  L  +  K+ + E  SF   H
Sbjct: 478 VAPVNIRRFQGRDLSFSTLKDMKFEETSFLPSH 510


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,781,467
Number of Sequences: 5004
Number of extensions: 29473
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)