Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20034
(519 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0156 - 1086750-1086920,1087680-1087847,1087935-1088171,108... 76 1e-14
05_01_0365 + 2865496-2865588,2865673-2865856,2866791-2866948,286... 74 8e-14
09_02_0466 + 9599389-9599662,9600324-9600643,9600950-9601186,960... 66 2e-11
11_06_0130 - 20408835-20411771 28 3.9
08_01_0845 + 8290891-8291017,8291708-8291777,8292139-8293084 28 5.2
06_01_1084 + 8883301-8883515,8883736-8884063,8884764-8885022,888... 28 5.2
07_01_0070 + 515247-515397,516198-516265,516360-518456,518750-51... 27 6.8
06_01_0601 + 4337575-4340149,4340566-4340978 27 9.0
04_03_0925 - 20856628-20856690,20856786-20856845,20856924-208570... 27 9.0
01_01_1126 + 8925685-8925745,8926178-8926343,8927135-8927585,892... 27 9.0
>02_01_0156 -
1086750-1086920,1087680-1087847,1087935-1088171,
1088763-1089073,1089343-1089571
Length = 371
Score = 76.2 bits (179), Expect = 1e-14
Identities = 38/88 (43%), Positives = 56/88 (63%), Gaps = 1/88 (1%)
Frame = +2
Query: 251 NKLLAKITSLNESPSVHGIIVQMPXXSDHAXDAHRVTDAVSPDKDVDGLNTINEGRVXV- 427
+++L I + N PSVHGI+VQ+P H + + +AVS +KDVDG + +N GR+ +
Sbjct: 154 DEVLKHIATFNSDPSVHGILVQLPLP--HHMNDENILNAVSIEKDVDGFHPLNIGRLAMQ 211
Query: 428 GDLSGXIPCTPAGCVELIXKTGVTIAGK 511
G +PCTP GC+EL+ + GV I GK
Sbjct: 212 GRDPFFVPCTPKGCMELLHRYGVEIKGK 239
Score = 56.0 bits (129), Expect = 2e-08
Identities = 28/75 (37%), Positives = 43/75 (57%)
Frame = +3
Query: 27 AQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGRXDSNVYIRMKLKAAEKI 206
A+II G VA I ++ ++ +++ G P LA++ VG R DS Y+R K KA E +
Sbjct: 80 AKIIDGKLVAKQIREEIAVEIAKMKDA-IGVVPGLAVILVGSRKDSQTYVRNKKKACEAV 138
Query: 207 GIAAEHIRLPRDITE 251
GI + + LP D +E
Sbjct: 139 GIKSYEVNLPEDSSE 153
>05_01_0365 +
2865496-2865588,2865673-2865856,2866791-2866948,
2867035-2867247,2867330-2867560
Length = 292
Score = 73.7 bits (173), Expect = 8e-14
Identities = 36/86 (41%), Positives = 58/86 (67%), Gaps = 1/86 (1%)
Frame = +2
Query: 257 LLAKITSLNESPSVHGIIVQMPXXSDHAXDAHRVTDAVSPDKDVDGLNTINEGRVXV-GD 433
L+A++ LN P+VHGI+VQ+P H + ++ + +S +KDVDG + +N G++ + G
Sbjct: 78 LVAEVHRLNADPAVHGILVQLPLPK-HINE-EKILNEISLEKDVDGFHPLNIGKLAMKGR 135
Query: 434 LSGXIPCTPAGCVELIXKTGVTIAGK 511
+PCTP GC+EL+ ++GVTI GK
Sbjct: 136 DPLFLPCTPKGCMELLTRSGVTINGK 161
>09_02_0466 +
9599389-9599662,9600324-9600643,9600950-9601186,
9601278-9601445,9601778-9601966
Length = 395
Score = 65.7 bits (153), Expect = 2e-11
Identities = 30/82 (36%), Positives = 48/82 (58%), Gaps = 1/82 (1%)
Frame = +2
Query: 269 ITSLNESPSVHGIIVQMPXXSDHAXDAHRVTDAVSPDKDVDGLNTINEGRVXVGDLSG-X 445
++ NE PSVHGI+VQ+P D R+ A+S +KDVDG + +N G + +
Sbjct: 178 VSRFNEDPSVHGILVQLPLPQH--MDEERILSAISLEKDVDGFHPLNVGNLALRSRKPLF 235
Query: 446 IPCTPAGCVELIXKTGVTIAGK 511
+PC C+EL+ ++G+ + GK
Sbjct: 236 VPCAAKACLELLLQSGIELMGK 257
Score = 52.4 bits (120), Expect = 2e-07
Identities = 29/75 (38%), Positives = 43/75 (57%)
Frame = +3
Query: 27 AQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQVGGRXDSNVYIRMKLKAAEKI 206
A II G VA I + ++V ++++ G P LA+V VG R DS Y+R K+K E++
Sbjct: 98 ATIIDGKSVAEDIRFQIAEEVRQMKNA-VGHVPGLAVVLVGDRRDSESYVRYKIKGCEEV 156
Query: 207 GIAAEHIRLPRDITE 251
GI + LP + TE
Sbjct: 157 GIKSLLAELPGNCTE 171
>11_06_0130 - 20408835-20411771
Length = 978
Score = 28.3 bits (60), Expect = 3.9
Identities = 22/83 (26%), Positives = 33/83 (39%)
Frame = +2
Query: 221 TYPLTKGHH*NKLLAKITSLNESPSVHGIIVQMPXXSDHAXDAHRVTDAVSPDKDVDGLN 400
T P T G+ + N ++ I +P S+ +H + P K++ L
Sbjct: 540 TIPSTLGNMTRLFELNLAHNNFIGAIPTEIFSIPTLSETLDVSHNKLEGSIP-KEIGELK 598
Query: 401 TINEGRVXVGDLSGXIPCTPAGC 469
I E LSG IP T +GC
Sbjct: 599 NIVEFHADSNKLSGEIPSTISGC 621
>08_01_0845 + 8290891-8291017,8291708-8291777,8292139-8293084
Length = 380
Score = 27.9 bits (59), Expect = 5.2
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -2
Query: 119 EARPF*TQPRHLLTQVIFYRS 57
EAR F QP+H LT ++ +RS
Sbjct: 338 EARSFEPQPKHRLTNLVIFRS 358
>06_01_1084 +
8883301-8883515,8883736-8884063,8884764-8885022,
8885581-8885681
Length = 300
Score = 27.9 bits (59), Expect = 5.2
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 63 IENDLRQQVT--RLRSKWSGFEPRLAIVQVGG 152
I+NDL Q++T R+ S+W G + A VGG
Sbjct: 160 IDNDLAQRLTGTRMESRWRGRRSKGASTGVGG 191
>07_01_0070 +
515247-515397,516198-516265,516360-518456,518750-518900,
519883-520638,520990-521164,521303-521387
Length = 1160
Score = 27.5 bits (58), Expect = 6.8
Identities = 13/27 (48%), Positives = 16/27 (59%)
Frame = +2
Query: 218 RTYPLTKGHH*NKLLAKITSLNESPSV 298
R YPL H N+LL +L+ SPSV
Sbjct: 34 RRYPLAAHHSHNRLLPPAHALSSSPSV 60
>06_01_0601 + 4337575-4340149,4340566-4340978
Length = 995
Score = 27.1 bits (57), Expect = 9.0
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +2
Query: 425 VGDLSGXIPCTPAGCV--ELIXKTGVTIAGKM 514
+ +LSG IP T AGCV E I +G ++ G +
Sbjct: 473 MNNLSGAIPATIAGCVALEYINLSGNSLQGSL 504
>04_03_0925 -
20856628-20856690,20856786-20856845,20856924-20857001,
20857127-20857192,20857542-20858675,20858991-20860283
Length = 897
Score = 27.1 bits (57), Expect = 9.0
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
Frame = -2
Query: 179 PDVDVGVXAPAHLHDGKPGLEARPF*TQPRHLLTQVIFYRSCNFNP-RYNLCH 24
PD G A + KPG + + QPRH +F SC NP + N+ H
Sbjct: 272 PDSRTGCNAHLVIRRKKPGAKLEVYAFQPRH--NHPLFATSCMPNPLQPNVVH 322
>01_01_1126 +
8925685-8925745,8926178-8926343,8927135-8927585,
8927832-8927900,8928067-8928110,8928211-8928355
Length = 311
Score = 27.1 bits (57), Expect = 9.0
Identities = 9/13 (69%), Positives = 11/13 (84%)
Frame = -2
Query: 146 HLHDGKPGLEARP 108
HLHDG+PGL +P
Sbjct: 100 HLHDGEPGLAKKP 112
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,041,381
Number of Sequences: 37544
Number of extensions: 207028
Number of successful extensions: 466
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 450
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 460
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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