Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20034
         (519 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21968| Best HMM Match : THF_DHG_CYH (HMM E-Value=0.0018)            80   1e-15
SB_24382| Best HMM Match : F5_F8_type_C (HMM E-Value=4.90006e-41)      33   0.14 
SB_58594| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)             28   4.0  
SB_44251| Best HMM Match : Transposase_5 (HMM E-Value=0.072)           28   4.0  
SB_31795| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_22943| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.0  
SB_16136| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0025)          28   4.0  
SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08)        28   4.0  
SB_32724| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0029)          28   5.3  
SB_20652| Best HMM Match : OmpH (HMM E-Value=1.9)                      28   5.3  
SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_2592| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   5.3  
SB_15987| Best HMM Match : RVT_1 (HMM E-Value=3.7e-27)                 27   9.3  

>SB_21968| Best HMM Match : THF_DHG_CYH (HMM E-Value=0.0018)
          Length = 101

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 38/80 (47%), Positives = 55/80 (68%), Gaps = 1/80 (1%)
 Frame = +2

Query: 254 KLLAKITSLNESPSVHGIIVQMPXXSDHAXDAHRVTDAVSPDKDVDGLNTINEGRVXVGD 433
           ++L  +  LN+  ++HGIIVQ+P  S++  D    T+AV P+KDVDGL+  N GR+  G+
Sbjct: 21  QVLKAVDELNKDSAIHGIIVQLPPDSENPIDPGICTNAVIPEKDVDGLHDENAGRLARGE 80

Query: 434 LSGXI-PCTPAGCVELIXKT 490
           L+  I PCTP GC+ELI K+
Sbjct: 81  LATCIVPCTPRGCLELIKKS 100


>SB_24382| Best HMM Match : F5_F8_type_C (HMM E-Value=4.90006e-41)
          Length = 316

 Score = 33.1 bits (72), Expect = 0.14
 Identities = 19/48 (39%), Positives = 25/48 (52%)
 Frame = -2

Query: 146 HLHDGKPGLEARPF*TQPRHLLTQVIFYRSCNFNPRYNLCHLSPENCL 3
           HLH   P L  RPF T+ R + +Q +F R    + RY  C L   +CL
Sbjct: 18  HLH---PPLFTRPFFTRIRTIYSQPVFIRRTLMDNRYRSCLLKGFSCL 62


>SB_58594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1001

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 468 HPAGVQGMXPDRSPTXTRPSLIVFKPSTSLSGETASVTR 352
           HP G+  +  D +PT TR S++  K +T LS     +TR
Sbjct: 883 HPEGLVLICGDFNPTSTRFSVVATKRATGLSQIVKVLTR 921


>SB_56472| Best HMM Match : Transposase_5 (HMM E-Value=1.2)
          Length = 615

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +1

Query: 262 SKNHESERISFRSRHHCSNAP 324
           +K+++S +I FR R HC N P
Sbjct: 63  TKSYQSVQIQFRKRFHCRNFP 83


>SB_44251| Best HMM Match : Transposase_5 (HMM E-Value=0.072)
          Length = 221

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 262 SKNHESERISFRSRHHCSNAP 324
           +K+++S  I FR R HC N P
Sbjct: 18  TKSYQSAHIQFRKRFHCRNFP 38


>SB_31795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1525

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 468 HPAGVQGMXPDRSPTXTRPSLIVFKPSTSLSGETASVTR 352
           HP G+  +  D +PT TR S++  K +T LS     +TR
Sbjct: 258 HPEGLVLICGDFNPTSTRFSVVATKRATGLSQIVKVLTR 296


>SB_22943| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 816

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 468 HPAGVQGMXPDRSPTXTRPSLIVFKPSTSLSGETASVTR 352
           HP G+  +  D +PT TR S++  K +T LS     +TR
Sbjct: 260 HPEGLVLICGDFNPTSTRFSVVATKRATGLSQIVKVLTR 298


>SB_16136| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0025)
          Length = 731

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 468 HPAGVQGMXPDRSPTXTRPSLIVFKPSTSLSGETASVTR 352
           HP G+  +  D +PT TR S++  K +T LS     +TR
Sbjct: 534 HPEGLVLICGDFNPTSTRFSVVATKRATGLSQIVKVLTR 572


>SB_12729| Best HMM Match : Pox_A_type_inc (HMM E-Value=5.3e-08)
          Length = 1183

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 4/99 (4%)
 Frame = +3

Query: 72  DLRQQVTRLRSKWSGFEPRLAIVQVGGRXDSNV--YIRMKLKAAEKI--GIAAEHIRLPR 239
           DL  QVT LRS+    E  +++++   R D N   ++R +    EK    + +E  ++  
Sbjct: 441 DLDVQVTNLRSQKIRLEAEISVMKEERRRDDNEVDHLRKEKSDLEKAMHSLRSEKTKVET 500

Query: 240 DITEISC*QKSRV*TNLLPFTASLFKCPXIRTTRSTLIE 356
           DIT      + R  T+ L F A   +   +R  RS  +E
Sbjct: 501 DITMAEDTWRKRNDTSELRFEADDLE-KELRDLRSERVE 538


>SB_32724| Best HMM Match : Exo_endo_phos (HMM E-Value=0.0029)
          Length = 302

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 468 HPAGVQGMXPDRSPTXTRPSLIVFKPSTSLSGETASVTR 352
           HP G+  +  D +PT TR S++  K +T LS     +TR
Sbjct: 151 HPEGLVLICGDFNPTSTRFSVVATKRATCLSQIAKVLTR 189


>SB_20652| Best HMM Match : OmpH (HMM E-Value=1.9)
          Length = 842

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +3

Query: 21  KMAQIISGIEVAGSIENDLRQQVTRLRSKWSGFEPRLAIVQ 143
           K A + +G  +AG I++ + +QVTR +   +GF   L + Q
Sbjct: 2   KKAAVAAGASIAGHIKHAIAEQVTRAK---TGFPRSLTLAQ 39


>SB_19884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3486

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +3

Query: 75  LRQQVTRLRSKWSGFEPRLAIVQVGGRXDS 164
           +RQ V  + SK+ G  PR AI Q+GG  D+
Sbjct: 597 VRQPVNDVTSKYPG-SPRNAIAQIGGSRDA 625


>SB_2592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 294

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -2

Query: 119 EARPF*TQPRHLLTQV---IFYRSCNFNPRYNLCHL 21
           +ARP    P  L T+    + Y +C+ +P +NLC L
Sbjct: 123 DARPLLLHPNKLFTKRRGRVSYYNCSTSPSFNLCEL 158


>SB_15987| Best HMM Match : RVT_1 (HMM E-Value=3.7e-27)
          Length = 745

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -1

Query: 468 HPAGVQGMXPDRSPTXTRPSLIVFKPSTSLSGETASVTR 352
           HP G+  +  D +PT T  S  V K ST LS     +TR
Sbjct: 86  HPEGLIAICVDFNPTGTGLSPQVIKRSTGLSQIVTVLTR 124


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,718,132
Number of Sequences: 59808
Number of extensions: 230024
Number of successful extensions: 439
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 417
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1160542895
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)