Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20033
         (729 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory pro...    24   1.4  
AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    23   1.9  
AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochr...    22   4.4  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    22   5.8  
U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   7.7  

>DQ855493-1|ABH88180.1|  127|Tribolium castaneum chemosensory
          protein 7 protein.
          Length = 127

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 22 ALVLCGLLAAVSAAPQYY 75
          A++LC  L AVSAA   Y
Sbjct: 6  AVILCAFLVAVSAAENKY 23


>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +3

Query: 381 NLPWDVNSEGSWV 419
           N  WDV+S GSW+
Sbjct: 187 NAWWDVHSTGSWL 199


>AF265298-1|AAG17641.1|  124|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 124

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/27 (37%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +1

Query: 178 EMQHLDNMMKELSLKFPSI-INEGRVE 255
           EM++L+ ++KE    +PS+ + E R+E
Sbjct: 43  EMKYLEMVLKEAQRLYPSVPVIERRLE 69


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +1

Query: 16  MIALVLCGLLAAVSAAPQYYHGSSHWPYHHYD 111
           MI L+    + AVSAAP  ++ S    Y H D
Sbjct: 1   MIPLIAIAGILAVSAAPAEFYESR---YDHLD 29


>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 7.7
 Identities = 10/25 (40%), Positives = 12/25 (48%)
 Frame = -2

Query: 635 YVVASTLSRSHWSSGLSPSRRQRPA 561
           Y+    L  S+W   LSP  RQ  A
Sbjct: 390 YMSTIDLRSSYWQIPLSPESRQYTA 414


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,628
Number of Sequences: 336
Number of extensions: 3568
Number of successful extensions: 12
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19467635
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)