Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20033
(729 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1107 - 30954647-30954769,30955052-30955141,30955309-309556... 32 0.54
05_03_0515 + 14930736-14932697 30 1.6
01_06_0610 - 30587269-30587717,30587996-30588212,30588363-305884... 30 1.6
06_03_0186 - 17653101-17653205,17653594-17653660,17654744-176548... 30 2.2
04_04_0347 + 24564589-24565296 29 2.9
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 29 2.9
09_04_0579 + 18676165-18676524,18676846-18677058,18677136-186772... 29 3.8
08_02_1129 - 24513568-24514296,24515380-24515817 29 3.8
05_07_0286 - 28988294-28988383,28988486-28989007,28989117-289897... 29 5.0
03_02_0490 - 8840577-8840914,8841009-8841067,8841168-8841283,884... 29 5.0
05_03_0626 - 16335816-16335917,16336331-16336558,16336694-163369... 28 6.6
03_06_0599 + 34984869-34985319,34986581-34987563 28 6.6
>04_04_1107 -
30954647-30954769,30955052-30955141,30955309-30955617,
30955732-30955842,30955945-30956379,30956452-30956610,
30957044-30957994,30959016-30959483
Length = 881
Score = 31.9 bits (69), Expect = 0.54
Identities = 23/80 (28%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Frame = +3
Query: 441 ITFPLKQKQPEDSKRPVAEPTETPLRM*VVKRWSSPPRATCGTLTSAWRQPRR--PMRSR 614
IT LKQK P + PV E + P +V RW P T + + + Q + P R
Sbjct: 478 ITALLKQKYPGSTYLPVGEHGDVPANEELVYRWKHYPAETRAAILNEFLQRYKWAPGREA 537
Query: 615 KCRSDHVRCQHQRRCGVLAD 674
+C R ++ G+L +
Sbjct: 538 ECLKIFQRRAVKQFTGLLCE 557
>05_03_0515 + 14930736-14932697
Length = 653
Score = 30.3 bits (65), Expect = 1.6
Identities = 15/65 (23%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = +1
Query: 19 IALVLCGLLAAVSAAPQYYHGSSHWPYHHYDPFSPYVRESM-LDTHSLWSNLANEMQHLD 195
+ L +C + V +P + +W YH + YV +S+ ++ S WSN + L
Sbjct: 308 LCLEVCAIFFMVMMSPWTWASLQYWKYHRLADAAWYVFKSLQTESMSWWSNSLGQYNFLS 367
Query: 196 NMMKE 210
+ +
Sbjct: 368 SCFSD 372
>01_06_0610 -
30587269-30587717,30587996-30588212,30588363-30588482,
30589092-30589202,30589300-30589374,30589940-30590031,
30590121-30590302,30590479-30590570,30591179-30591283,
30591374-30591451,30591553-30591705
Length = 557
Score = 30.3 bits (65), Expect = 1.6
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +3
Query: 432 VLKITFPLKQKQPEDSKRPVAEPTETPLRM*VVKRWSSPPRATCGTLTSAWRQPRRPMRS 611
++++T PLK++ S P+A+P + L + +V W +P + L S+W P
Sbjct: 351 LVQLTPPLKKRAFSISSSPLAKPNQIHLTVSIVS-WRTPFKRMRRGLCSSWLAGLNPNEG 409
Query: 612 RKC 620
C
Sbjct: 410 TGC 412
>06_03_0186 -
17653101-17653205,17653594-17653660,17654744-17654898,
17655759-17655995
Length = 187
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/34 (47%), Positives = 20/34 (58%)
Frame = +3
Query: 585 RQPRRPMRSRKCRSDHVRCQHQRRCGVLADSILI 686
R+PRR R R C DH CQH G +A++I I
Sbjct: 69 RRPRRRQRRRAC--DHHHCQH-ALVGCMAEAICI 99
>04_04_0347 + 24564589-24565296
Length = 235
Score = 29.5 bits (63), Expect = 2.9
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = +1
Query: 16 MIALVLCGLLAAVSAAPQYYHGSSHWPY-HHYDPF 117
M L+ LLAA SAA +H ++ PY HH+ P+
Sbjct: 5 MSMLLASSLLAAASAARADHHSPAYAPYPHHHAPW 39
>02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/44 (29%), Positives = 26/44 (59%)
Frame = +1
Query: 127 VRESMLDTHSLWSNLANEMQHLDNMMKELSLKFPSIINEGRVEA 258
+++++L+ LA+E+Q D+++ EL K S + R+EA
Sbjct: 1298 LKQTLLEKSGELEKLAHELQSKDSLLIELEAKIKSYADADRIEA 1341
>09_04_0579 +
18676165-18676524,18676846-18677058,18677136-18677288,
18677503-18677622,18677696-18677782,18677876-18678313
Length = 456
Score = 29.1 bits (62), Expect = 3.8
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 540 SSPPRATCGTLTSAWRQPRRPMR 608
SS PR C LTS +R+P P R
Sbjct: 26 SSTPRRRCAALTSRFREPASPRR 48
>08_02_1129 - 24513568-24514296,24515380-24515817
Length = 388
Score = 29.1 bits (62), Expect = 3.8
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 659 ASSLMLTAYVVASTLSRSHWSSGLSPSRRQRPARCSRW*TPS 534
A+ L +A + S +S +SP QR A CSRW PS
Sbjct: 239 AAFLAFHGLSLALLFAASVSASAVSPPAEQRAACCSRWWVPS 280
>05_07_0286 -
28988294-28988383,28988486-28989007,28989117-28989758,
28990554-28990597,28990836-28991016
Length = 492
Score = 28.7 bits (61), Expect = 5.0
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 2/56 (3%)
Frame = +2
Query: 560 VRDVDVGLETAQKTNEIAKV*--KRPRTLSTSETMRSSCRFHINLIKYKCGELMEF 721
V+ D G A+K E K KRPRT+ TSE + S HI + + + ++ E+
Sbjct: 219 VQQADGGGGRAEKAGEQGKSGRRKRPRTVKTSEEVESQRMTHIAVERNRRRQMNEY 274
>03_02_0490 -
8840577-8840914,8841009-8841067,8841168-8841283,
8841578-8841640,8841826-8842038,8842211-8842330,
8842453-8842578,8842593-8842749,8842830-8842962,
8843054-8843138,8843305-8843421
Length = 508
Score = 28.7 bits (61), Expect = 5.0
Identities = 11/33 (33%), Positives = 16/33 (48%)
Frame = +3
Query: 549 PRATCGTLTSAWRQPRRPMRSRKCRSDHVRCQH 647
PR T G T+ W +P RP + R ++ H
Sbjct: 21 PRVTAGEETTLWEEPVRPKKEEPPRHNNEEMDH 53
>05_03_0626 -
16335816-16335917,16336331-16336558,16336694-16336973,
16337596-16338560
Length = 524
Score = 28.3 bits (60), Expect = 6.6
Identities = 11/25 (44%), Positives = 13/25 (52%)
Frame = +3
Query: 534 RWSSPPRATCGTLTSAWRQPRRPMR 608
RW+ PP C T S + P RP R
Sbjct: 120 RWAPPPAPRCSTPLSPYSPPFRPAR 144
>03_06_0599 + 34984869-34985319,34986581-34987563
Length = 477
Score = 28.3 bits (60), Expect = 6.6
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Frame = +3
Query: 537 WSSPPRATCGTLTSAWRQPRRPM-RSRKCRSDHVRC 641
WSSPP W+ PR+ R R R H C
Sbjct: 331 WSSPPPPPAAAEAPEWKAPRQAKPRRRAMRCPHCGC 366
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,731,567
Number of Sequences: 37544
Number of extensions: 440554
Number of successful extensions: 1413
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1412
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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