Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20033
         (729 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37032| Best HMM Match : efhand (HMM E-Value=4.7e-35)                32   0.55 
SB_21071| Best HMM Match : efhand (HMM E-Value=0.48)                   31   0.96 
SB_6748| Best HMM Match : Pkinase (HMM E-Value=1.7e-05)                28   6.7  
SB_40213| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.1e-07)           28   8.9  
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.9  

>SB_37032| Best HMM Match : efhand (HMM E-Value=4.7e-35)
          Length = 552

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
 Frame = +3

Query: 393 DVNSEGSWVYEKDVLKITFPLKQKQPEDSK--RPVAEPTETPLRM*VVKRWSSPPRATC- 563
           DV+ +G  VY KD L+  F L  K  +DSK  RP  +PT+ P    V         AT  
Sbjct: 423 DVDGKGRIVY-KDFLR-HFVLAMKPQDDSKLIRPKLQPTKVPSSPGVRSDELIDVMATIR 480

Query: 564 GTLTSAWRQPRRPMRS 611
           G +   W++ RR  R+
Sbjct: 481 GKVQEDWKEMRRAFRA 496


>SB_21071| Best HMM Match : efhand (HMM E-Value=0.48)
          Length = 151

 Score = 31.1 bits (67), Expect = 0.96
 Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
 Frame = +3

Query: 393 DVNSEGSWVYEKDVLKITFPLKQKQPEDSK--RPVAEPTETP 512
           DVN +G  VY KD L+  F L  K  +DSK  RP  +PT+ P
Sbjct: 112 DVNGKGRIVY-KDFLR-HFVLAMKPQDDSKLIRPKLQPTKVP 151


>SB_6748| Best HMM Match : Pkinase (HMM E-Value=1.7e-05)
          Length = 315

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 258 DKYQISIHLPGYEQKDINVKAKNGVLMVQANSAFNH-YXKIQNLPW 392
           D Y++  +    EQ+D N   K G   VQ    FN+ Y  I+ L W
Sbjct: 22  DDYEVDENSDDEEQEDPNDYCKGGYHPVQLGDLFNNRYSVIRKLGW 67


>SB_40213| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.1e-07)
          Length = 750

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = -2

Query: 290 TRQVNRYLILVASTRPSFIMLGNFNDSSFIMLSKCCISLARLDQSECV 147
           T   N   ILV +T+  F +LGN  D   +++ +   SL  +D  +C+
Sbjct: 139 TYGTNILSILVPNTKLGFRLLGNLTDHVDVLIEEWFPSLNGVDPVQCL 186


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 14/31 (45%), Positives = 20/31 (64%)
 Frame = +1

Query: 127  VRESMLDTHSLWSNLANEMQHLDNMMKELSL 219
            + ES L+TH +  NLA E+  LDN   E++L
Sbjct: 4396 IAESQLETHDVL-NLAYEITELDNSPPEIAL 4425


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,477,972
Number of Sequences: 59808
Number of extensions: 489309
Number of successful extensions: 1537
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1398
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1534
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)