Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20033
         (729 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB065805-1|BAC06024.1|  324|Homo sapiens seven transmembrane hel...    32   2.4  
X65024-1|CAA46158.1|  823|Homo sapiens Xeroderma Pigmentosum Gro...    30   9.8  
D21089-1|BAA04651.1|  940|Homo sapiens XP-C repair complementing...    30   9.8  
BC016620-1|AAH16620.1|  940|Homo sapiens xeroderma pigmentosum, ...    30   9.8  
AY131066-1|AAM77801.1|  940|Homo sapiens xeroderma pigmentosum, ...    30   9.8  
AK222844-1|BAD96564.1|  872|Homo sapiens xeroderma pigmentosum, ...    30   9.8  
AF261901-1|AAF87574.1|  940|Homo sapiens xeroderma pigmentosum g...    30   9.8  

>AB065805-1|BAC06024.1|  324|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 324

 Score = 31.9 bits (69), Expect = 2.4
 Identities = 23/86 (26%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
 Frame = -1

Query: 699 LYLIKLIWNRQELRIVSDVDSVRGRFYTFAISLVFWAVSKPTSTSRTLLSVVNSISSRLT 520
           LYL+ L WN   + ++     +    Y F  +L F  +   +ST+  +LS + +    ++
Sbjct: 35  LYLLTLAWNLSLIALIKMDSHLHMPMYFFLSNLSFLDICYVSSTAPKMLSDIITEQKTIS 94

Query: 519 FVE-VSQW----ALQLASCYPLAAFA 457
           FV   +Q+     + L  C+ LAA A
Sbjct: 95  FVGCATQYFVFCGMGLTECFLLAAMA 120


>X65024-1|CAA46158.1|  823|Homo sapiens Xeroderma Pigmentosum Group 
           C Complementing factor protein.
          Length = 823

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 245 DAWRRQVSDIYSPAWLRTERHQRESEKWSAD 337
           D W R V+  Y P W+   R  R   +W A+
Sbjct: 458 DGWVRDVTQRYDPVWMTVTRKCRVDAEWWAE 488


>D21089-1|BAA04651.1|  940|Homo sapiens XP-C repair complementing
           protein (p125) protein.
          Length = 940

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 245 DAWRRQVSDIYSPAWLRTERHQRESEKWSAD 337
           D W R V+  Y P W+   R  R   +W A+
Sbjct: 575 DGWVRDVTQRYDPVWMTVTRKCRVDAEWWAE 605


>BC016620-1|AAH16620.1|  940|Homo sapiens xeroderma pigmentosum,
           complementation group C protein.
          Length = 940

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 245 DAWRRQVSDIYSPAWLRTERHQRESEKWSAD 337
           D W R V+  Y P W+   R  R   +W A+
Sbjct: 575 DGWVRDVTQRYDPVWMTVTRKCRVDAEWWAE 605


>AY131066-1|AAM77801.1|  940|Homo sapiens xeroderma pigmentosum,
           complementation group C protein.
          Length = 940

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 245 DAWRRQVSDIYSPAWLRTERHQRESEKWSAD 337
           D W R V+  Y P W+   R  R   +W A+
Sbjct: 575 DGWVRDVTQRYDPVWMTVTRKCRVDAEWWAE 605


>AK222844-1|BAD96564.1|  872|Homo sapiens xeroderma pigmentosum,
           complementation group C variant protein.
          Length = 872

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 245 DAWRRQVSDIYSPAWLRTERHQRESEKWSAD 337
           D W R V+  Y P W+   R  R   +W A+
Sbjct: 507 DGWVRDVTQRYDPVWMTVTRKCRVDAEWWAE 537


>AF261901-1|AAF87574.1|  940|Homo sapiens xeroderma pigmentosum
           group C protein protein.
          Length = 940

 Score = 29.9 bits (64), Expect = 9.8
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = +2

Query: 245 DAWRRQVSDIYSPAWLRTERHQRESEKWSAD 337
           D W R V+  Y P W+   R  R   +W A+
Sbjct: 575 DGWVRDVTQRYDPVWMTVTRKCRVDAEWWAE 605


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,081,083
Number of Sequences: 237096
Number of extensions: 2383366
Number of successful extensions: 6272
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6049
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6272
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8623170556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)