Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20033
(729 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z74046-1|CAA98556.2| 178|Caenorhabditis elegans Hypothetical pr... 33 0.21
U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical pr... 29 2.6
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 29 4.5
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 29 4.5
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 29 4.5
AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical ... 28 5.9
U40059-1|AAA81138.3| 867|Caenorhabditis elegans Hypothetical pr... 28 7.9
AF106582-3|AAC78214.1| 222|Caenorhabditis elegans Hypothetical ... 28 7.9
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti... 28 7.9
AC024744-2|AAK72068.1| 327|Caenorhabditis elegans Hypothetical ... 28 7.9
>Z74046-1|CAA98556.2| 178|Caenorhabditis elegans Hypothetical
protein ZC116.1 protein.
Length = 178
Score = 33.1 bits (72), Expect = 0.21
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +1
Query: 25 LVLCGLLAAVSAAPQYYHGSSHWPYHHYDP 114
L LC LLA SA YY S + PY++Y P
Sbjct: 5 LALCSLLAVASAQYLYYPTSYYTPYYYYYP 34
>U46675-7|AAB52641.1| 1274|Caenorhabditis elegans Hypothetical
protein F35A5.1 protein.
Length = 1274
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 453 LKQKQPEDSKRPVAEPTETPLRM*VVKRWSSPPRATCGTLTSAWRQP 593
LK+K+P S +PV++P +P + VK+ P T W+ P
Sbjct: 239 LKKKEPSTSVKPVSDP--SPTKKVPVKKEPEVPPTPIKNPTKKWKPP 283
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +3
Query: 378 QNLPWDVNSEGSWVYEKDVLKITFPLKQKQPEDSKRPVAEPTETPL 515
Q LP D + G++VY + V + T PL + + P+ +P TPL
Sbjct: 5663 QTLPTDAS--GNYVYLQKVEETTKPLPTDESGNIVYPITKPDGTPL 5706
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +3
Query: 378 QNLPWDVNSEGSWVYEKDVLKITFPLKQKQPEDSKRPVAEPTETPL 515
Q LP D + G++VY + V + T PL + + P+ +P TPL
Sbjct: 5708 QTLPTDAS--GNYVYLQKVEETTKPLPTDESGNIVYPITKPDGTPL 5751
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 28.7 bits (61), Expect = 4.5
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = +3
Query: 378 QNLPWDVNSEGSWVYEKDVLKITFPLKQKQPEDSKRPVAEPTETPL 515
Q LP D + G++VY + V + T PL + + P+ +P TPL
Sbjct: 5708 QTLPTDAS--GNYVYLQKVEETTKPLPTDESGNIVYPITKPDGTPL 5751
>AF106591-4|AAO61422.1| 1217|Caenorhabditis elegans Hypothetical
protein T01A4.1a protein.
Length = 1217
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/52 (32%), Positives = 28/52 (53%), Gaps = 3/52 (5%)
Frame = -2
Query: 383 VLYFXVMIKSTVSLHHQHSIFRFHVDVFLFV---TRQVNRYLILVASTRPSF 237
VL ++I S+ S HQHS+ + V L + R N +L+ +A ++P F
Sbjct: 6 VLLLSLVISSSSSSSHQHSLLPIDIVVGLPIEEGDRGKNPFLLTLAKSKPVF 57
>U40059-1|AAA81138.3| 867|Caenorhabditis elegans Hypothetical
protein K03C7.1 protein.
Length = 867
Score = 27.9 bits (59), Expect = 7.9
Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Frame = +3
Query: 456 KQKQPE-DSKRPVAEPTETPLRM*VVKRWSSPPRATCGTLTSAWRQP 593
K K P+ SK P +P+ETP V K P + WR P
Sbjct: 20 KPKDPKLASKAPAKKPSETPKPKEVPKELPKPAEPSKPAAPKKWRPP 66
>AF106582-3|AAC78214.1| 222|Caenorhabditis elegans Hypothetical
protein W05F2.3 protein.
Length = 222
Score = 27.9 bits (59), Expect = 7.9
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = -1
Query: 672 RQELRIVSDVDSVRGRFYTFAISLVFWAVSKPTSTSRT-LLSVVNSISSRLTFVEVSQWA 496
R EL+ +D+DS+RG + W +S S ++ LL +++I + + + +
Sbjct: 120 RNELQ--ADIDSLRGHIVYLQADVRDWILSNENSQFKSVLLGAMSAIVVLIAYTVICKCC 177
Query: 495 LQLASCYPLAAFASAG 448
+ + LAAF + G
Sbjct: 178 RRRSRLNHLAAFVNDG 193
>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
protein protein 6 protein.
Length = 1106
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 420 YEKDVLKITFPLKQKQPEDSKRPVAEPTETP 512
Y+KDV+K+T LK+K E + +AE TP
Sbjct: 578 YKKDVIKLTHTLKEKDKELLDK-IAEIAATP 607
>AC024744-2|AAK72068.1| 327|Caenorhabditis elegans Hypothetical
protein Y108G3AL.2 protein.
Length = 327
Score = 27.9 bits (59), Expect = 7.9
Identities = 17/60 (28%), Positives = 27/60 (45%)
Frame = +2
Query: 425 ERRVENHLPAEAKAARG*QEASCRAH*DTSTNVSREEMEFTTESNVRDVDVGLETAQKTN 604
E++ E LP +K + CR H ++ E + DV++G ET+ KTN
Sbjct: 269 EKKEEKSLPKVSKCKHHLRHHHCRKHRKNCPAKAKRLREEKEKQQQNDVEMG-ETSSKTN 327
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,006,582
Number of Sequences: 27780
Number of extensions: 354907
Number of successful extensions: 1047
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 970
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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