Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20032
         (758 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces p...    26   5.1  
SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase...    26   6.7  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    25   8.9  
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch...    25   8.9  
SPBC23E6.07c |rfc1||DNA replication factor C complex subunit Rfc...    25   8.9  

>SPAC2F7.06c |pol4||DNA polymerase X family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 506

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = +1

Query: 631 LVVIDWRKGVRRSLSPKRCYVLFHGGRRP 717
           +V IDW    + SL+P   YV++H  R+P
Sbjct: 75  IVKIDWLNEPKESLTPGNPYVIWH--RKP 101


>SPBPJ4664.06 |gpt1||UDP-glucose-glycoprotein glucosyltransferase
            Gpt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1448

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +2

Query: 86   VFTKEPMVNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYNIE 220
            + TK  + + D K+K       +++ L P+    I  IAK+YN E
Sbjct: 1174 IMTKSVIEHTDKKVK----FWFIENFLSPSFKSSIPAIAKKYNFE 1214


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/20 (50%), Positives = 12/20 (60%), Gaps = 1/20 (5%)
 Frame = +1

Query: 595 WKYY-GITVTDDNLVVIDWR 651
           W Y  GI V DD + + DWR
Sbjct: 317 WNYLSGIAVLDDRIAMHDWR 336


>SPBC577.05c |rec27|mug41|meiotic recombination protein
           Rec27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = +2

Query: 107 VNLDMKMKELCIMKLLDHILQPTMFEDIKEIAKEYN 214
           VNL  K  ++   ++++H+L+    ++I+   K+Y+
Sbjct: 12  VNLKKKQLQITSSEIIEHVLEELNLKNIERRVKKYD 47


>SPBC23E6.07c |rfc1||DNA replication factor C complex subunit
           Rfc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 934

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 464 HRTDCKGLYLPAPYESIPTSSLTAMSSVKP 553
           ++ D +  Y+P  YES+P    T  S V P
Sbjct: 764 NKLDLRQHYIPILYESLPVKLSTGHSDVVP 793


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,942,989
Number of Sequences: 5004
Number of extensions: 57693
Number of successful extensions: 169
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)