Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20030
         (736 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0362 + 17211788-17212300,17213342-17213623,17214071-17214139     85   4e-17
01_05_0697 + 24372233-24372328,24372523-24372554,24372871-243729...    67   1e-11
07_03_0533 - 19178296-19178516,19178790-19178847,19179315-191793...    29   2.9  
09_02_0327 - 7284829-7284889,7284946-7286126                           28   8.8  
04_03_0434 + 15889712-15889797,15890086-15890287,15891184-158913...    28   8.8  

>10_08_0362 + 17211788-17212300,17213342-17213623,17214071-17214139
          Length = 287

 Score = 85.4 bits (202), Expect = 4e-17
 Identities = 43/96 (44%), Positives = 65/96 (67%), Gaps = 16/96 (16%)
 Frame = +1

Query: 253 SALEAVTDSSRYFVVKIQDDNGRAAYIGLGFGDRSDSFDLNVALQDHFKWLKKEQE---- 420
           +A+E V DSSRYFV++I+D  G+ A++GLGFG+R+++FD NVAL DH K++K+E E    
Sbjct: 86  AAVETVLDSSRYFVLRIEDGRGKHAFVGLGFGERNEAFDFNVALSDHEKYVKREHEKEAA 145

Query: 421 ------SDQTPQGQLDL------GFKDGETIKINMK 492
                  ++   GQ+D+        K+GETI+IN+K
Sbjct: 146 DGGAGGGEENDDGQIDIHPAVNRRLKEGETIRINVK 181



 Score = 65.3 bits (152), Expect = 5e-11
 Identities = 26/56 (46%), Positives = 40/56 (71%)
 Frame = +2

Query: 65  IFVFKIPPRTSNRGYRAADWNLQEPQWTGRMRLVSKGNELVMKLEDKTSGELFAKC 232
           + V+KIPPRT++ GY+  +W   +  W+GR+R+VS G+   ++LED  SG+LFA C
Sbjct: 22  VSVYKIPPRTTSGGYKCGEWLQSDRIWSGRLRVVSCGDRCEIRLEDPASGDLFAAC 77


>01_05_0697 +
           24372233-24372328,24372523-24372554,24372871-24372971,
           24373050-24373122,24373267-24373298,24373482-24373651,
           24374029-24374127,24375460-24375855
          Length = 332

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 27/60 (45%), Positives = 41/60 (68%)
 Frame = +2

Query: 50  FSEERIFVFKIPPRTSNRGYRAADWNLQEPQWTGRMRLVSKGNELVMKLEDKTSGELFAK 229
           F     +V+ IPPR +   YRA +WN+ +  W G +++VSKG E ++KLEDK +GEL+A+
Sbjct: 23  FQVAECYVYLIPPRKTAASYRADEWNVNKWAWEGTLKVVSKGEECIIKLEDKNTGELYAR 82



 Score = 52.0 bits (119), Expect = 5e-07
 Identities = 24/51 (47%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
 Frame = +1

Query: 259 LEAVTDSSRYFVVKIQ---DDNGRAAYIGLGFGDRSDSFDLNVALQDHFKW 402
           +E V DSSRYFV++++   D   R A+IGLGF +R  ++D   AL DH K+
Sbjct: 93  VEPVIDSSRYFVLRVEENIDGRQRHAFIGLGFRERPQAYDFQAALHDHMKY 143


>07_03_0533 -
           19178296-19178516,19178790-19178847,19179315-19179370,
           19179527-19179646,19180446-19180599,19180911-19181018,
           19181134-19181197,19181342-19181518,19181679-19181824,
           19181912-19181941,19181999-19182150,19182266-19182347
          Length = 455

 Score = 29.5 bits (63), Expect = 2.9
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +1

Query: 304 QDDNGRAAYIGLGFGDRSDSFDLNVAL 384
           +D NG A YIG G GD + SFD+   L
Sbjct: 281 EDPNGHAVYIGTGRGDLA-SFDMRTEL 306


>09_02_0327 - 7284829-7284889,7284946-7286126
          Length = 413

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 410 KNKRAIKHHRDNWILDLK 463
           KN R+++ HR N+I DLK
Sbjct: 255 KNPRSVRKHRHNYIFDLK 272


>04_03_0434 +
           15889712-15889797,15890086-15890287,15891184-15891323,
           15891420-15891559,15891762-15891913,15892773-15892902,
           15892990-15893141
          Length = 333

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -3

Query: 323 ARPLSSCIFTTKYRELSVTASSALLDIYLLGTSQIIRHLFY 201
           A+ + +CI +T  + +++ ASS L  +  L ++ I   L+Y
Sbjct: 63  AKVMGNCILSTNVQRVALAASSNLALVLALASNYIANTLYY 103


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,466,916
Number of Sequences: 37544
Number of extensions: 313605
Number of successful extensions: 904
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 901
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)