Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20030
         (736 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_20140| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.55 
SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)                   31   0.73 
SB_27066| Best HMM Match : HALZ (HMM E-Value=7.9)                      30   2.2  
SB_2307| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.9  
SB_57157| Best HMM Match : Seryl_tRNA_N (HMM E-Value=1.2)              29   5.2  
SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.2  
SB_56371| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.8  
SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0)                       28   6.8  
SB_21130| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.5)                 28   6.8  
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)                28   9.0  

>SB_20140| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 433

 Score = 31.9 bits (69), Expect = 0.55
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -3

Query: 353 LSPNPRPIYAARPLSSCIFTTKYRELSVTASSALLDIYL 237
           L P P P+YA + + + IF ++ R +S      L  +Y+
Sbjct: 266 LPPQPNPVYATKGMRTVIFGSRIRTVSFEGKKVLRPVYM 304


>SB_41240| Best HMM Match : UCH (HMM E-Value=9.2e-25)
          Length = 1088

 Score = 31.5 bits (68), Expect = 0.73
 Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = +2

Query: 50  FSEERIFVFKIPPRTSNRGYRAADWNLQEPQ---WTGRMRLVSKGNELVMKLED 202
           + +E ++ F  P + S  G  AAD +  + Q   W G  R+VSK  E +++L++
Sbjct: 19  YKDECVYCFDSPVQLSLAGVLAADTSAYKEQVASWDGEKRVVSKHAESLLQLDN 72


>SB_27066| Best HMM Match : HALZ (HMM E-Value=7.9)
          Length = 99

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 16/58 (27%), Positives = 26/58 (44%)
 Frame = -1

Query: 394 NGLEVQHLDQTNQIYHQIQDRYMQHDHYHLVFSQQNIVSYQLQLPVHSWIFIYWALRK 221
           N LE  +     ++ H++ D   Q D YH   ++ N    Q    + SW+F   + RK
Sbjct: 38  NQLEADYHQTVKELNHKVIDLQQQIDDYHQSDAEPNRNEIQRSNSIMSWMFHKKSQRK 95


>SB_2307| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 175

 Score = 29.1 bits (62), Expect = 3.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +1

Query: 346 GDRSDSFDLNVALQDHFKW 402
           GD  +SFD+   L+D+FKW
Sbjct: 121 GDLKESFDIGHILEDYFKW 139


>SB_57157| Best HMM Match : Seryl_tRNA_N (HMM E-Value=1.2)
          Length = 334

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +1

Query: 403 LKKEQESDQTPQGQLDLGFKDGETIKINMKITKKDGVR 516
           L+ EQE  +T   QL L  +DG  +K  ++ +K+ G++
Sbjct: 20  LQHEQERLKTQNKQLQLKLRDGSRVKHELQQSKETGMK 57


>SB_26086| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1511

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 253  SALEAVTDSSRYFVVKIQDDNGRAAYIGLGFGDRSDSF 366
            SA + V    RY ++K   + G A Y G  FG RS  F
Sbjct: 1130 SARKHVGQQDRYLILKAVGNRGSACYFG-HFGQRSSQF 1166


>SB_56371| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1035

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
 Frame = -3

Query: 356 DLSPNPRPIYAARPLSSCIFTTKYRELSVTA---SSALLDIYLLGTSQIIRHLFY 201
           D+SP   P     P  S I   + R L VTA         I+++ +S+I+ HL Y
Sbjct: 53  DISPYGIPQTVTSPSDSTILRQQGRSLRVTAPPPPPLCFSIWMVPSSRIVSHLHY 107


>SB_32293| Best HMM Match : BRCA2 (HMM E-Value=0)
          Length = 1649

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 367 DLNVALQDHFKWLKKEQESDQTPQGQLDLGFKDGETIKINMKITKKDGVRAA 522
           D++ A  D  +W     ES  TP  Q D+G  +GE +   +K+ +K G + A
Sbjct: 59  DVSEARDDTIEWT----ESMATPPRQKDVGINEGELMDTKIKMEEK-GTKVA 105


>SB_21130| Best HMM Match : Smg4_UPF3 (HMM E-Value=1.5)
          Length = 565

 Score = 28.3 bits (60), Expect = 6.8
 Identities = 17/52 (32%), Positives = 27/52 (51%)
 Frame = +1

Query: 367 DLNVALQDHFKWLKKEQESDQTPQGQLDLGFKDGETIKINMKITKKDGVRAA 522
           D++ A  D  +W     ES  TP  Q D+G  +GE +   +K+ +K G + A
Sbjct: 200 DVSEARDDTIEWT----ESMATPPRQKDVGINEGELMDTKIKMEEK-GTKVA 246


>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
          Length = 1188

 Score = 27.9 bits (59), Expect = 9.0
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 379 QHLD-QTNQIYHQIQDRYMQHDHYHLVFSQQNIVSYQLQLPVHS 251
           QH+  +T Q +H  Q  Y Q   + LV  QQ ++S   Q P H+
Sbjct: 502 QHISRETQQQFHHSQV-YSQAQQHQLVSQQQQMLSPAQQSPTHA 544


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,467,571
Number of Sequences: 59808
Number of extensions: 387140
Number of successful extensions: 984
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 929
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 983
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1974037988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)