Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20030
         (736 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       24   1.3  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   2.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   6.9  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +1

Query: 661 SGVNLIQQVLQNHSNNPSQ 717
           SG++ +QQ+LQ H  +P+Q
Sbjct: 69  SGIHQMQQLLQQHILSPTQ 87


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 405 EKRTRERSNTTGTIGSWI*RW*NN*NQHENY*KR 506
           ++R RERS  +  I S   +  +N N ++NY K+
Sbjct: 302 DRRERERSKESKIISSLSNKTIHNNNNYKNYNKK 335


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 362 ESDLSPNPRPIYAARPLSS 306
           E++ SP+P P  A+ P SS
Sbjct: 506 ETNSSPSPNPRIASAPSSS 524


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 179,325
Number of Sequences: 438
Number of extensions: 3557
Number of successful extensions: 10
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)