Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20030
         (736 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g03900.1 68414.m00374 expressed protein                             78   7e-15
At3g58600.1 68416.m06531 expressed protein hypothetical protein ...    71   8e-13
At2g41490.1 68415.m05125 UDP-GlcNAc:dolichol phosphate N-acetylg...    29   4.2  
At2g42370.1 68415.m05243 expressed protein                             28   7.4  
At3g61690.1 68416.m06913 expressed protein                             27   9.8  
At2g26780.1 68415.m03212 expressed protein contains Pfam profile...    27   9.8  
At1g71400.1 68414.m08246 disease resistance family protein / LRR...    27   9.8  

>At1g03900.1 68414.m00374 expressed protein
          Length = 272

 Score = 77.8 bits (183), Expect = 7e-15
 Identities = 40/90 (44%), Positives = 63/90 (70%), Gaps = 10/90 (11%)
 Frame = +1

Query: 253 SALEAVTDSSRYFVVKIQDDNGRAAYIGLGFGDRSDSFDLNVALQDHFKWLK--KEQESD 426
           +++E   DSSRYFV++I D  G+ A+IGLGF +R+++FD NVAL DH K+++  KE+E+ 
Sbjct: 86  NSVEPSLDSSRYFVLRIDDGRGKYAFIGLGFAERNEAFDFNVALSDHEKYVRREKEKETG 145

Query: 427 QTPQ--GQLDL------GFKDGETIKINMK 492
           +T +    +D+        K+GETI+IN+K
Sbjct: 146 ETSESDNHIDIHPAVNHRLKEGETIRINVK 175



 Score = 64.9 bits (151), Expect = 5e-11
 Identities = 26/59 (44%), Positives = 41/59 (69%)
 Frame = +2

Query: 65  IFVFKIPPRTSNRGYRAADWNLQEPQWTGRMRLVSKGNELVMKLEDKTSGELFAKCPID 241
           + V+KIPPRT++ GY+  +W   +  W+GR+R+VS  +   ++LED  SG+LFA C +D
Sbjct: 22  VSVYKIPPRTTSGGYKCGEWLQSDKIWSGRLRVVSCKDRCEIRLEDSNSGDLFAACFVD 80


>At3g58600.1 68416.m06531 expressed protein hypothetical protein
           F21M11.17 - Arabidopsis thaliana, EMBL:AC003027
          Length = 302

 Score = 70.9 bits (166), Expect = 8e-13
 Identities = 35/86 (40%), Positives = 56/86 (65%), Gaps = 8/86 (9%)
 Frame = +1

Query: 259 LEAVTDSSRYFVVKIQ---DDNGRAAYIGLGFGDRSDSFDLNVALQDHFKWLKKEQESDQ 429
           +EAV DSSRYFV++++   D   R A+IGLGF +R++++D   AL DH K+L K++ +++
Sbjct: 107 VEAVIDSSRYFVLRVEEKIDGRVRHAFIGLGFRERTEAYDFQAALHDHMKYLNKKKTAEE 166

Query: 430 TPQ-----GQLDLGFKDGETIKINMK 492
             Q       +D   K+GETI + +K
Sbjct: 167 MEQHYQNTSSVDYSLKEGETIVLQLK 192



 Score = 64.1 bits (149), Expect = 9e-11
 Identities = 26/60 (43%), Positives = 41/60 (68%)
 Frame = +2

Query: 50  FSEERIFVFKIPPRTSNRGYRAADWNLQEPQWTGRMRLVSKGNELVMKLEDKTSGELFAK 229
           F     +V+ IPPR +   YRA +W++ +  W G +++VSKG E ++KL DKT+GEL+A+
Sbjct: 37  FQVPECYVYLIPPRKTAASYRADEWDVNKWAWEGALKVVSKGEECIIKLVDKTTGELYAQ 96


>At2g41490.1 68415.m05125 UDP-GlcNAc:dolichol phosphate
           N-acetylglucosamine-1-phosphate transferase identical to
           GI:5804772
          Length = 431

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/59 (25%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = -2

Query: 330 ICSTTIIILYFHNKIS*AISYSFQCTPGYLSIGHFANNSPLVLSSNFM--TNSFPFDTN 160
           +CS  + +L FH K+   +  S     G   +G F     + +++ ++   N F FD N
Sbjct: 59  LCSLYLYLLCFHYKVDNELKRSILINAGLSLVGFFVTLKMIPVTARYVLRRNMFGFDIN 117


>At2g42370.1 68415.m05243 expressed protein
          Length = 715

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/26 (50%), Positives = 20/26 (76%)
 Frame = +1

Query: 106 IQGSRLELARATMDRSHEVGVKRERV 183
           I GSR++L+RA + RS ++  K+ERV
Sbjct: 179 INGSRIKLSRADLARSLKLPNKKERV 204


>At3g61690.1 68416.m06913 expressed protein
          Length = 1303

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -2

Query: 264 FQCTPGYL-SIGHFANNSPLVLSSNFMTNSFPFDTNLMRPVHCGSCKF 124
           F  TP  L S+G+   N P ++ SN      P+ TNL  P +  S  F
Sbjct: 633 FPITPSILASMGYGQRNMPGIVPSNLPFIEAPWSTNLQFPQNFVSSPF 680


>At2g26780.1 68415.m03212 expressed protein contains Pfam profile
           TBP (TATA-binding protein) -interacting protein 120
           (TIP120); contains TIGRFAM profile TIGR01612:
           reticulocyte binding protein
          Length = 1866

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = -2

Query: 165 TNLMRPVHCGSCKF-QSAALYPLLDV----LGGI-LKTNIRSSLK*HFHKYPLFIK 16
           T+L    HC S      +A  P LD+    L G+ LK   RS +  H HKYP FI+
Sbjct: 540 TSLYNSHHCPSLYICMLSAADPKLDIREIALEGLFLKEEGRSIVSNHDHKYPKFIE 595


>At1g71400.1 68414.m08246 disease resistance family protein / LRR
           family protein contains leucine rich-repeat domains
           Pfam:PF00560, INTERPRO:IPR001611; similar to Hcr2-5D
           [Lycopersicon esculentum] gi|3894393|gb|AAC78596
          Length = 847

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 243 LSIGHFANNSPLVLSSNFMTNSFPFDTNL 157
           +S  +    S  VLSSN  T++FPFD ++
Sbjct: 272 ISFANLTKLSIFVLSSNNFTSTFPFDMSI 300


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,649,356
Number of Sequences: 28952
Number of extensions: 263995
Number of successful extensions: 806
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1614253080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)