Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20029
         (681 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12D12.02c |cdm1||DNA polymerase delta subunit Cdm1|Schizosac...    30   0.27 
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S...    28   1.4  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    27   1.9  
SPAC1F5.08c |yam8|ehs1|calcium transport protein|Schizosaccharom...    27   1.9  
SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    27   3.3  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    26   5.8  
SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces ...    25   7.7  
SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    25   7.7  
SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    25   7.7  

>SPBC12D12.02c |cdm1||DNA polymerase delta subunit
           Cdm1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score = 30.3 bits (65), Expect = 0.27
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
 Frame = +3

Query: 330 NCAYCENVTKPIVLYNVTRHEFNKYAYST----GPIIVKNAIKSWRATKEFN 473
           N    E +++PI   N+T+ EF  + + T    GP +    ++ W+  K FN
Sbjct: 74  NQIMAERISEPIHCENITKVEFILHHFDTTARYGPYLGMTRMQRWKRAKNFN 125


>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 971

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 13/19 (68%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
 Frame = -2

Query: 551 NSRIDIRH-PSSHSYPSLF 498
           N RID  H P SH YPSLF
Sbjct: 930 NVRIDKEHVPESHRYPSLF 948


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1213

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 8/26 (30%), Positives = 15/26 (57%)
 Frame = -3

Query: 664  WIVISGMTVTPRFLSWFIFHSFFRHI 587
            W+ + G+ +    L W +FH F R++
Sbjct: 995  WLFLQGLAIDLLKLPWAVFHIFLRYL 1020


>SPAC1F5.08c |yam8|ehs1|calcium transport
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +3

Query: 261 NFMSARCLVPSNYLIWEATRPLANCAYCENVTK 359
           NF     L+P N   W A   L NC+ C N  K
Sbjct: 330 NFTYTLDLIPCNATSWSAYSLLKNCSDCANSYK 362


>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = +3

Query: 456 ATKEFNYKMFKRLYEETGVAMRAWMTDVNS*ILKLTCLA*RKFSICL 596
           +T+ ++ +MFK LY+ + +AM  WM +  S I     +A   ++I +
Sbjct: 334 STRNYSSQMFK-LYKASAIAMLLWMVNQASQITSSMTIARPLYNILI 379


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 8/44 (18%)
 Frame = -1

Query: 351 HFHNRHNLLMVELPPRL--------NNYLVLNILHS*NYSDKQY 244
           H H+   L++ EL P +         NY+V +IL + + SDK+Y
Sbjct: 565 HCHSERKLIIEELLPHILKLTQDQYGNYVVQHILRTGSESDKKY 608


>SPBC409.15 |||rRNA processing protein Tsr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 179

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/50 (24%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = +3

Query: 366 VLYNVTRHEFNKYAYSTGP--IIVKNAIKSWRATKEFNYKMFKRLYEETG 509
           ++  V + EFN  +       I+ ++ +  W+A  E NY+  + ++E  G
Sbjct: 68  LILQVLQDEFNVGSIEDDSPYILAQDLVNVWKAACEDNYEPIREIHERLG 117


>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 423 IIVKNAIKSWRATKEFNYKMFKRL 494
           +I KN I  +RA K+   K+FKRL
Sbjct: 206 LIRKNIIPYYRAYKQIPLKIFKRL 229


>SPBC691.01 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 5/42 (11%)
 Frame = +2

Query: 548 NFKTDLFSLKEVFNMPEER-----VKNEPGQKPWGNCHSRNY 658
           N+KT ++S    F  PE       V+++PG  PW   +S N+
Sbjct: 229 NWKTRIYSFSVFF--PEHMDSRVLVQSDPGDLPWDRGYSENW 268


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,521,204
Number of Sequences: 5004
Number of extensions: 48641
Number of successful extensions: 130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)