Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20029
(681 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3102| Best HMM Match : TehB (HMM E-Value=8.1) 65 6e-11
SB_2673| Best HMM Match : UPF0154 (HMM E-Value=1.9) 59 4e-09
SB_47292| Best HMM Match : DUF1187 (HMM E-Value=2.9) 38 0.006
SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12) 38 0.010
SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32) 29 2.6
SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9) 29 3.5
SB_25366| Best HMM Match : Tctex-1 (HMM E-Value=2.6e-08) 28 6.1
SB_21466| Best HMM Match : Xlink (HMM E-Value=1.2) 28 8.0
>SB_3102| Best HMM Match : TehB (HMM E-Value=8.1)
Length = 168
Score = 64.9 bits (151), Expect = 6e-11
Identities = 26/83 (31%), Positives = 50/83 (60%), Gaps = 1/83 (1%)
Frame = +3
Query: 279 CLVPSNYLIWEATRPLANCAYCENVTKPIVLYNVTRHEF-NKYAYSTGPIIVKNAIKSWR 455
CL P + + RP +C+ C ++ K + N+T EF KYAYS P+++++ +K+W
Sbjct: 47 CLFPIPEFVLDRFRPPIDCSICRDIHKVERVSNITPQEFAKKYAYSARPVVIEDGMKNWT 106
Query: 456 ATKEFNYKMFKRLYEETGVAMRA 524
A++ F++ FK++Y A+++
Sbjct: 107 ASEHFSFDFFKKVYSPDSPALKS 129
Score = 35.9 bits (79), Expect = 0.030
Identities = 18/44 (40%), Positives = 25/44 (56%)
Frame = +2
Query: 503 DWGSYESLDDGCQFLNFKTDLFSLKEVFNMPEERVKNEPGQKPW 634
D + +S D CQF + T +LKEVF MPE+ + + KPW
Sbjct: 123 DSPALKSRDGQCQFFPYNTKFSTLKEVFQMPEKDAQMK--GKPW 164
>SB_2673| Best HMM Match : UPF0154 (HMM E-Value=1.9)
Length = 322
Score = 58.8 bits (136), Expect = 4e-09
Identities = 30/78 (38%), Positives = 44/78 (56%), Gaps = 2/78 (2%)
Frame = +3
Query: 279 CLVPSNYLIWEATRPLANCAY-CENVTKPIVLYNVTRHEF-NKYAYSTGPIIVKNAIKSW 452
CLV N L E TR ++CA CE + + +TR EF KYAY P++V +A ++W
Sbjct: 84 CLVEVNELFGEMTRKPSDCAMMCEGLEAVPKVSGLTREEFIEKYAYKGRPVVVTDAAQNW 143
Query: 453 RATKEFNYKMFKRLYEET 506
A FN+ K+LY+ +
Sbjct: 144 SALDTFNFTFLKKLYDSS 161
Score = 46.0 bits (104), Expect = 3e-05
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 2/46 (4%)
Frame = +2
Query: 512 SYESLDDGCQFLNFKTDLFSLKEVFNMPEERV--KNEPGQKPWGNC 643
SY+ ++ CQF +KT+ +LK+ F+MP+ER K +P W NC
Sbjct: 164 SYKITEEECQFFPYKTEFLTLKDAFHMPKERAEFKGKPWYIGWSNC 209
>SB_47292| Best HMM Match : DUF1187 (HMM E-Value=2.9)
Length = 238
Score = 38.3 bits (85), Expect = 0.006
Identities = 14/57 (24%), Positives = 30/57 (52%)
Frame = +3
Query: 342 CENVTKPIVLYNVTRHEFNKYAYSTGPIIVKNAIKSWRATKEFNYKMFKRLYEETGV 512
C+ + V+ +E + + +S P+I+ +A W+A K+F+ + +LY E +
Sbjct: 128 CKELKTIGVIEKTDANEMSDFLFSETPVIINDATDDWQARKDFSIEFLAKLYSENSI 184
>SB_39434| Best HMM Match : JmjC (HMM E-Value=0.12)
Length = 672
Score = 37.5 bits (83), Expect = 0.010
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Frame = +3
Query: 321 PLANCAYCENVTKPIVLYNVTRHEF-NKYAYSTGPIIVKNAIKSWRATKEFNYKMFKRLY 497
PL A CE + P ++ EF NKY + + P+I+ +AIK W A +++ + + Y
Sbjct: 292 PLEIGAMCERIAMP------SQEEFLNKYLFRSKPVIITDAIKHWPAIQKWTNEFLRAKY 345
Query: 498 EET 506
T
Sbjct: 346 SNT 348
>SB_28817| Best HMM Match : DEAD (HMM E-Value=3.4e-32)
Length = 651
Score = 29.5 bits (63), Expect = 2.6
Identities = 16/39 (41%), Positives = 20/39 (51%)
Frame = +3
Query: 324 LANCAYCENVTKPIVLYNVTRHEFNKYAYSTGPIIVKNA 440
L + CE V +V+ V R EF+ YST IVK A
Sbjct: 507 LVDACECERVVVHLVVEGVLREEFHFTPYSTISYIVKGA 545
>SB_12486| Best HMM Match : 7TMR-DISM_7TM (HMM E-Value=2.9)
Length = 492
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Frame = -2
Query: 506 SLFIQSFKHLIIKFFGCSPAFYGIFNYDWSG*ICILIKFMSSYI-I*HYGFSYIFTIGTI 330
++ + F+++ FF C+P F+ +F +S +C+ F Y + Y + +F + T
Sbjct: 41 AMITRCFRYVYPVFFVCNPVFFAMFTRCFS--LCLPGVFRYDYTGVFRYVYP-VFLLFTR 97
Query: 329 C*WSSCLP 306
C +S CLP
Sbjct: 98 C-FSLCLP 104
>SB_25366| Best HMM Match : Tctex-1 (HMM E-Value=2.6e-08)
Length = 556
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = +3
Query: 393 FNKYAYSTGPIIVKNAIKSWRATKEFNYKMFKRLYEE 503
+ ++ P+I++NAI W A K +N + K+ E
Sbjct: 40 YREWVAPNRPVIIRNAINHWPALKLWNSQYLKKCIGE 76
>SB_21466| Best HMM Match : Xlink (HMM E-Value=1.2)
Length = 347
Score = 27.9 bits (59), Expect = 8.0
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
Frame = +2
Query: 518 ESL-DDGC--QFLNFKTDLFSLKEVFNMPEE 601
ESL DD C +F K DL+ LKE N P++
Sbjct: 50 ESLTDDECLSEFRFIKNDLYRLKEALNFPDQ 80
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,533,709
Number of Sequences: 59808
Number of extensions: 309006
Number of successful extensions: 813
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1757375282
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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