Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20029
         (681 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82259-10|CAD36480.1|  439|Caenorhabditis elegans Hypothetical p...    29   3.1  
AL022473-2|CAA18549.2|  439|Caenorhabditis elegans Hypothetical ...    29   3.1  
AL022473-1|CAJ43448.1|  339|Caenorhabditis elegans Hypothetical ...    29   3.1  
AF332211-1|AAK17982.1|  439|Caenorhabditis elegans nuclear recep...    29   3.1  
Z48638-8|CAA88568.1|  237|Caenorhabditis elegans Hypothetical pr...    29   4.1  
Z83125-2|CAB05621.2|  391|Caenorhabditis elegans Hypothetical pr...    28   5.4  
U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily ass...    28   5.4  
U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily ass...    28   5.4  
AY037796-1|AAK94761.1|  283|Caenorhabditis elegans GLY-17 protein.     28   5.4  
AF022985-8|AAB69966.1|  354|Caenorhabditis elegans Hypothetical ...    28   5.4  
U49956-2|AAO38616.1|  136|Caenorhabditis elegans Dauer or aging ...    27   9.4  
AF106573-7|AAC78158.1|  838|Caenorhabditis elegans Hypothetical ...    27   9.4  

>Z82259-10|CAD36480.1|  439|Caenorhabditis elegans Hypothetical
           protein H27C11.1a protein.
          Length = 439

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 252 CLNNFMSARCLVPS-NYLIWEATRPLANCAYCENVTKPIVL 371
           C N+F+SA C+ PS ++L W+  + L   A  E   KP+ L
Sbjct: 270 CNNSFLSAHCIPPSTSFLRWKTIQSLNKWAQRE--LKPLCL 308


>AL022473-2|CAA18549.2|  439|Caenorhabditis elegans Hypothetical
           protein H27C11.1a protein.
          Length = 439

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 252 CLNNFMSARCLVPS-NYLIWEATRPLANCAYCENVTKPIVL 371
           C N+F+SA C+ PS ++L W+  + L   A  E   KP+ L
Sbjct: 270 CNNSFLSAHCIPPSTSFLRWKTIQSLNKWAQRE--LKPLCL 308


>AL022473-1|CAJ43448.1|  339|Caenorhabditis elegans Hypothetical
           protein H27C11.1b protein.
          Length = 339

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 252 CLNNFMSARCLVPS-NYLIWEATRPLANCAYCENVTKPIVL 371
           C N+F+SA C+ PS ++L W+  + L   A  E   KP+ L
Sbjct: 170 CNNSFLSAHCIPPSTSFLRWKTIQSLNKWAQRE--LKPLCL 208


>AF332211-1|AAK17982.1|  439|Caenorhabditis elegans nuclear receptor
           NHR-97 protein.
          Length = 439

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
 Frame = +3

Query: 252 CLNNFMSARCLVPS-NYLIWEATRPLANCAYCENVTKPIVL 371
           C N+F+SA C+ PS ++L W+  + L   A  E   KP+ L
Sbjct: 270 CNNSFLSAHCIPPSTSFLRWKTIQSLNKWAQRE--LKPLCL 308


>Z48638-8|CAA88568.1|  237|Caenorhabditis elegans Hypothetical
           protein ZK892.6 protein.
          Length = 237

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 13/22 (59%), Positives = 16/22 (72%)
 Frame = -2

Query: 671 LTLDSNFWNDSYPKVFVLVHFS 606
           L LDS FWNDSY ++  LV+ S
Sbjct: 66  LKLDSKFWNDSYWQLKYLVNQS 87


>Z83125-2|CAB05621.2|  391|Caenorhabditis elegans Hypothetical
           protein T15D6.3 protein.
          Length = 391

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 563 LFSLKEVFNMPEERVKNEPGQKPWGNCHSRN 655
           LF  K++FN+P     N+P    WGN  SR+
Sbjct: 293 LFGNKDLFNVPGSFNFNDPLTNGWGNYVSRH 323


>U29614-2|AAM54190.1| 1020|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 279, isoform a protein.
          Length = 1020

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +2

Query: 545 LNFKTDLFSLKEVFNMPEE---RVKNEPGQKPWGNCHSR 652
           LN KT+LFSL E+     E    + N+  Q   GNC S+
Sbjct: 596 LNIKTELFSLPEIAKCHPELSIDILNQVPQSADGNCDSK 634


>U29614-1|AAM54191.1| 1061|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 279, isoform b protein.
          Length = 1061

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = +2

Query: 545 LNFKTDLFSLKEVFNMPEE---RVKNEPGQKPWGNCHSR 652
           LN KT+LFSL E+     E    + N+  Q   GNC S+
Sbjct: 637 LNIKTELFSLPEIAKCHPELSIDILNQVPQSADGNCDSK 675


>AY037796-1|AAK94761.1|  283|Caenorhabditis elegans GLY-17 protein.
          Length = 283

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 563 LFSLKEVFNMPEERVKNEPGQKPWGNCHSRN 655
           LF  K++FN+P     N+P    WGN  SR+
Sbjct: 185 LFGNKDLFNVPGSFNFNDPLTNGWGNYVSRH 215


>AF022985-8|AAB69966.1|  354|Caenorhabditis elegans Hypothetical
           protein T15B7.13 protein.
          Length = 354

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 15/35 (42%), Positives = 21/35 (60%)
 Frame = +3

Query: 6   IKILITYVQ*LHYGNK*CVTENEFKKENMRSSKNR 110
           +KIL  ++    Y NK  V  N F+K+NM  +KNR
Sbjct: 1   MKILNLHIS--EYKNKMTVEYNSFEKKNMSENKNR 33


>U49956-2|AAO38616.1|  136|Caenorhabditis elegans Dauer or aging
           adult overexpressionprotein 2 protein.
          Length = 136

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = +1

Query: 85  RICAVQKTAIANGLNN-FEMKQFDLI--CDYNHNDKSEKFNK 201
           + C   K A +N L+  F  + F+ I  C YNH DK+E F K
Sbjct: 94  KYCTAHKGAPSNYLDYAFCTENFNEIRDCFYNHLDKNEPFKK 135


>AF106573-7|AAC78158.1|  838|Caenorhabditis elegans Hypothetical
           protein F52D2.6 protein.
          Length = 838

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 6/60 (10%)
 Frame = +3

Query: 360 PIVLYNVTRHEFN----KYAYSTGPI--IVKNAIKSWRATKEFNYKMFKRLYEETGVAMR 521
           P+  Y+  R E N    K+   T  I  I+   I +W+   + + K F R+Y E  +  +
Sbjct: 118 PLASYDAARLEANITMEKWKILTSVITDIISTKISTWKTLSDTDVKFFDRMYPECKIGFQ 177


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,656,804
Number of Sequences: 27780
Number of extensions: 262880
Number of successful extensions: 704
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)