Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20028
         (615 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces...    81   9e-17
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    31   0.10 
SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces pom...    26   3.8  
SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2 |Schizo...    26   5.0  
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb...    26   5.0  
SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual      25   8.7  

>SPAC821.10c |sod1||superoxide dismutase Sod1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 81.4 bits (192), Expect = 9e-17
 Identities = 41/83 (49%), Positives = 47/83 (56%)
 Frame = +3

Query: 258 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 437
           HFNPE K HG      RHVGDLGN+  D     +    D  ISL G + IIGR +V+H  
Sbjct: 64  HFNPEGKTHGDRTAAVRHVGDLGNLESDAQGNIKTTFSDSVISLFGANSIIGRTIVIHAG 123

Query: 438 ADDYGKSDHPDSRKTGNAGGRVA 506
            DD GK    +S KTGNAG R A
Sbjct: 124 EDDLGKGTSEESLKTGNAGARNA 146



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 24/60 (40%), Positives = 36/60 (60%), Gaps = 3/60 (5%)
 Frame = +1

Query: 85  RAIAVLSTET-IRGNITFTQV-QDGKVHVQGGITGLPPG-EYGFHVHEKGDLSGGCLSTG 255
           RA+AVL  ++ + G +TF QV Q+ +V V   + G     + GFH+H+ GD + GC S G
Sbjct: 3   RAVAVLRGDSKVSGVVTFEQVDQNSQVSVIVDLVGNDANAKRGFHIHQFGDNTNGCTSAG 62


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 31.5 bits (68), Expect = 0.10
 Identities = 17/40 (42%), Positives = 19/40 (47%)
 Frame = +3

Query: 294  NDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIG 413
            ND   H GDLG ++ D N        DDQI L G    IG
Sbjct: 3092 NDRIYHTGDLGRLLKDNNSLEFCGRTDDQIKLRGQRIEIG 3131


>SPBC19F8.03c |||clathrin binding protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 649

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -1

Query: 198 FTRRQPSDAPLNVNLPILN 142
           F ++QP+  PL  N+P+LN
Sbjct: 532 FEQQQPTTIPLQPNIPVLN 550


>SPAC18G6.04c |shm2||serine hydroxymethyltransferase Shm2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 472

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 64  HGFTTPSRAIAVLST 108
           HGF+TP +AI+ +ST
Sbjct: 143 HGFSTPQKAISAVST 157


>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 309 HVGDLGNVVFDENHYSRIDLVDDQI 383
           HV + GNV FD    S + L+D ++
Sbjct: 102 HVNEDGNVAFDSEFDSNLKLLDSEL 126


>SPAC821.04c |cid13||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 578

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 239 PPLRSPFSWTWKPYSPGGSP 180
           PP  S F+W + PY+   SP
Sbjct: 410 PPEPSHFAWAFDPYNATASP 429


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,424,109
Number of Sequences: 5004
Number of extensions: 48568
Number of successful extensions: 132
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 269634532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)