Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20028
(615 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_1006 + 13150394-13150450,13150787-13150899,13152538-131527... 104 5e-23
07_03_1599 - 28022196-28022218,28022355-28022408,28022545-280226... 103 1e-22
08_02_1596 + 28125331-28125556,28125986-28126047,28126160-281261... 97 7e-21
03_02_0185 - 6239421-6239480,6239971-6240024,6240523-6240578,624... 87 1e-17
04_04_0863 + 28847761-28848009,28848108-28848131,28849388-288494... 40 0.001
03_06_0167 - 32115770-32115886,32116388-32117102,32117178-321173... 36 0.019
03_05_0410 + 23964223-23964267,23964654-23965853 31 0.96
12_02_1170 - 26663491-26663602,26663999-26664104,26664613-266648... 29 2.9
04_04_1273 - 32307273-32307569,32307659-32307791,32307874-323081... 29 2.9
11_04_0091 - 13392864-13392950,13393534-13393579,13393706-133938... 29 3.9
04_04_0464 - 25405629-25405665,25406644-25406710,25408112-254083... 28 5.1
03_06_0343 + 33274329-33274981,33275197-33276121 28 5.1
08_01_0073 - 522751-522777,523022-523306 28 6.8
04_04_1272 - 32288142-32288456,32288538-32288670,32288780-322890... 28 6.8
03_01_0515 - 3864796-3865425 28 6.8
01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311 28 6.8
12_01_0907 + 8818357-8819033,8819077-8821352,8821465-8821730 27 8.9
11_06_0685 - 26272928-26273110,26273186-26273257,26273339-262734... 27 8.9
11_06_0459 + 23830204-23830350,23830419-23830592,23830738-238308... 27 8.9
11_06_0276 - 21826458-21826640,21826716-21826787,21826869-218269... 27 8.9
08_02_1258 - 25670092-25670152,25671124-25671327,25671400-256716... 27 8.9
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 27 8.9
05_01_0088 + 581619-581854,581890-582035,583143-583263,583593-58... 27 8.9
>03_02_1006 +
13150394-13150450,13150787-13150899,13152538-13152709,
13153791-13153878,13153971-13154072,13154197-13154292,
13154547-13154578,13154727-13154802,13155264-13155317,
13155431-13155453
Length = 270
Score = 104 bits (250), Expect = 5e-23
Identities = 48/83 (57%), Positives = 57/83 (68%)
Frame = +3
Query: 258 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 437
H+NP K+HG P D RH GDLGNV E+ + I +VD QI L+GP+ IIGRAVV+H
Sbjct: 180 HYNPAGKEHGAPEDETRHAGDLGNVTAGEDGVANIHVVDSQIPLTGPNSIIGRAVVVHAD 239
Query: 438 ADDYGKSDHPDSRKTGNAGGRVA 506
DD GK H S+ TGNAGGRVA
Sbjct: 240 PDDLGKGGHELSKTTGNAGGRVA 262
Score = 64.9 bits (151), Expect = 5e-11
Identities = 29/61 (47%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Frame = +1
Query: 76 TPSRAIAVL-STETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLST 252
T +A+ VL S+E ++G I F Q DG V G ++GL PG +GFH+H GD + GC+ST
Sbjct: 118 TMVKAVVVLGSSEIVKGTIHFVQEGDGPTTVTGSVSGLKPGLHGFHIHALGDTTNGCMST 177
Query: 253 G 255
G
Sbjct: 178 G 178
>07_03_1599 -
28022196-28022218,28022355-28022408,28022545-28022620,
28022727-28022758,28022921-28023016,28023105-28023206,
28023291-28023366
Length = 152
Score = 103 bits (246), Expect = 1e-22
Identities = 46/83 (55%), Positives = 56/83 (67%)
Frame = +3
Query: 258 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 437
HFNP K+HG P D NRH GDLGN+ + + +++ D QI L+G H IIGRAVV+H
Sbjct: 62 HFNPTGKEHGAPQDENRHAGDLGNITAGADGVANVNVSDSQIPLTGAHSIIGRAVVVHAD 121
Query: 438 ADDYGKSDHPDSRKTGNAGGRVA 506
DD GK H S+ TGNAGGRVA
Sbjct: 122 PDDLGKGGHELSKTTGNAGGRVA 144
Score = 66.9 bits (156), Expect = 1e-11
Identities = 30/58 (51%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Frame = +1
Query: 85 RAIAVL-STETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTG 255
+A+AVL S+E ++G I F+Q DG V G ++GL PG +GFHVH GD + GC+STG
Sbjct: 3 KAVAVLASSEGVKGTIFFSQEGDGPTSVTGSVSGLKPGLHGFHVHALGDTTNGCMSTG 60
>08_02_1596 +
28125331-28125556,28125986-28126047,28126160-28126199,
28126934-28127029,28127138-28127169,28127274-28127349,
28127430-28127483,28127916-28127941
Length = 203
Score = 97.5 bits (232), Expect = 7e-21
Identities = 44/83 (53%), Positives = 54/83 (65%)
Frame = +3
Query: 258 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 437
HFNP + HG P D RH GDLGN+V + + +VD QI LSGP+ ++GRA V+HE
Sbjct: 112 HFNPNNLTHGAPEDEVRHAGDLGNIVANAEGVAEATIVDKQIPLSGPNSVVGRAFVVHEL 171
Query: 438 ADDYGKSDHPDSRKTGNAGGRVA 506
DD GK H S TGNAGGR+A
Sbjct: 172 EDDLGKGGHELSLSTGNAGGRLA 194
Score = 60.9 bits (141), Expect = 8e-10
Identities = 28/58 (48%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +1
Query: 85 RAIAVLS-TETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTG 255
+A+AVL T + G +T TQ G V +TGL PG +GFH+HE GD + GC+STG
Sbjct: 53 KAVAVLKGTSQVEGVVTLTQDDQGPTTVNVRVTGLTPGLHGFHLHEFGDTTNGCISTG 110
>03_02_0185 -
6239421-6239480,6239971-6240024,6240523-6240578,
6241108-6241183,6241276-6241307,6241421-6241516,
6242498-6242599,6242728-6242833
Length = 193
Score = 87.0 bits (206), Expect = 1e-17
Identities = 38/66 (57%), Positives = 50/66 (75%)
Frame = +3
Query: 258 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 437
HFNP +K HG P+D RHVGDLGN+V +++ + I + D QISLSGPH I+GRAVV+H
Sbjct: 72 HFNPHNKSHGAPSDDERHVGDLGNIVANKDGVADIFIKDLQISLSGPHSILGRAVVVHAD 131
Query: 438 ADDYGK 455
+DD G+
Sbjct: 132 SDDLGR 137
Score = 48.8 bits (111), Expect = 3e-06
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +1
Query: 133 FTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTG 255
F G V+G +TGL PG +GFH+H GD + GC STG
Sbjct: 30 FQDPSTGYTEVRGRVTGLAPGLHGFHIHSFGDTTNGCNSTG 70
>04_04_0863 +
28847761-28848009,28848108-28848131,28849388-28849460,
28849550-28849684,28850191-28850411,28851747-28851983
Length = 312
Score = 40.3 bits (90), Expect = 0.001
Identities = 21/60 (35%), Positives = 32/60 (53%)
Frame = +1
Query: 82 SRAIAVLSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGLI 261
S A+A I G + QV V+ +GL PG++G+ ++E GDL+ G STG +
Sbjct: 165 SAAVAEFKGPVIFGVVRLAQVNMELAIVEATFSGLSPGKHGWSINEFGDLTRGAESTGKV 224
>03_06_0167 -
32115770-32115886,32116388-32117102,32117178-32117383,
32118094-32118138,32119047-32119109,32119726-32119749,
32120673-32120772,32120814-32120907,32121036-32121074,
32121605-32121668
Length = 488
Score = 36.3 bits (80), Expect = 0.019
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = +1
Query: 157 VHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGL 258
+ V+ ++GL P +GFHVH G + GC+ GL
Sbjct: 37 ITVKENVSGLKPVLHGFHVHALGGTTNGCMRNGL 70
>03_05_0410 + 23964223-23964267,23964654-23965853
Length = 414
Score = 30.7 bits (66), Expect = 0.96
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = -3
Query: 532 DL*NSDDTQATRPPALPVFLESGWSLLP 449
D+ ++DDT A+RPPAL + E +S++P
Sbjct: 259 DVVSTDDTVASRPPALKISKEKLFSMVP 286
>12_02_1170 -
26663491-26663602,26663999-26664104,26664613-26664816,
26664914-26665076,26665196-26665317,26665702-26665969
Length = 324
Score = 29.1 bits (62), Expect = 2.9
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 9 KNAASTHIPGCDRSGDGSSWLHHAVPRHCR 98
KN A+ + G D G SWL +PR R
Sbjct: 254 KNGAADQLTGVDEEGHRLSWLTETIPRMLR 283
>04_04_1273 -
32307273-32307569,32307659-32307791,32307874-32308105,
32308220-32308436,32308594-32308718,32309416-32310757
Length = 781
Score = 29.1 bits (62), Expect = 2.9
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -3
Query: 109 LWIERQWRGTAW*SHDEPSP 50
LW ++W TAW S D+PSP
Sbjct: 173 LWSGQEWFITAWRSADDPSP 192
>11_04_0091 -
13392864-13392950,13393534-13393579,13393706-13393819,
13394135-13394256,13394360-13394431,13395663-13395812,
13399258-13399341,13399459-13399560,13399634-13399671,
13399762-13399864,13399978-13400389,13400493-13400671
Length = 502
Score = 28.7 bits (61), Expect = 3.9
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -1
Query: 462 GHSCRNHQLSRGAPPLCR*CRADPI 388
G + +H+ GAPPL R C A P+
Sbjct: 109 GENLNHHRSPAGAPPLTRLCAAGPV 133
>04_04_0464 -
25405629-25405665,25406644-25406710,25408112-25408373,
25408989-25409198,25409818-25410006,25410087-25410548,
25410889-25410936,25411972-25412301
Length = 534
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Frame = -1
Query: 507 KRLD-RQRCRSSWSPDGH-SCRNHQLSRGAP 421
KR+D RQRC+ S+SP SC + +L AP
Sbjct: 453 KRMDDRQRCQCSFSPVARPSCGHDELQAAAP 483
>03_06_0343 + 33274329-33274981,33275197-33276121
Length = 525
Score = 28.3 bits (60), Expect = 5.1
Identities = 15/49 (30%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Frame = +2
Query: 17 CFNSH--SWLRSLWRRLIMASPRRPAPLPFYPQKRLEATSHSLRFKMGR 157
C SH S++ SLW ++ P+ L P+K+ E FK G+
Sbjct: 226 CVRSHFRSYMCSLWTEVVFKHPKTFETLAMDPEKKREIIDDLDMFKNGK 274
>08_01_0073 - 522751-522777,523022-523306
Length = 103
Score = 27.9 bits (59), Expect = 6.8
Identities = 15/37 (40%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = +1
Query: 409 SAERWCSTRKLMITARV-TIRTPGRPATLAVESLGCH 516
S RW R++ + R R PGRP T + SLG H
Sbjct: 11 STVRWQRRRRMASSVRRWRRRVPGRPRTSVMYSLGLH 47
>04_04_1272 -
32288142-32288456,32288538-32288670,32288780-32289020,
32289124-32289340,32289557-32289681,32290873-32292157
Length = 771
Score = 27.9 bits (59), Expect = 6.8
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -3
Query: 109 LWIERQWRGTAW*SHDEPSP 50
LW +W T+W S D+PSP
Sbjct: 172 LWTGAEWDLTSWRSPDDPSP 191
>03_01_0515 - 3864796-3865425
Length = 209
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/24 (50%), Positives = 13/24 (54%)
Frame = -2
Query: 239 PPLRSPFSWTWKPYSPGGSPVMPP 168
PPL P S T P P P+MPP
Sbjct: 49 PPLAPPPSVTSSPPPPAAGPLMPP 72
>01_07_0286 - 42519269-42519754,42524657-42525253,42525277-42526311
Length = 705
Score = 27.9 bits (59), Expect = 6.8
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 5/58 (8%)
Frame = +2
Query: 35 WL--RSLWRRLIMASPR---RPAPLPFYPQKRLEATSHSLRFKMGRFTFRGASLGCLR 193
WL R + RR+ +A APL Y + LE ++S R +GR F G LR
Sbjct: 461 WLNQRMVRRRVALADAEALDEEAPLRSYSYEELEHATYSFRHPLGRGAFGTVFKGTLR 518
>12_01_0907 + 8818357-8819033,8819077-8821352,8821465-8821730
Length = 1072
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 269 RIEMRPVDRQPPLRSPFSWTWKPYSPGG 186
R E++P L SP + W+PY G
Sbjct: 317 RTELQPAHIHAVLMSPMEFEWRPYGSSG 344
>11_06_0685 -
26272928-26273110,26273186-26273257,26273339-26273425,
26273566-26273655,26273741-26273785,26273872-26274054,
26274333-26274392,26274521-26274703,26274779-26274907,
26275083-26275380,26275454-26275608,26275791-26275929,
26276015-26276096,26276167-26276285,26276367-26276494,
26276640-26276813,26276882-26277028
Length = 757
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +3
Query: 327 NVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRK 479
N F N ++ V+D+ G H + +E +DDY ++H ++K
Sbjct: 394 NYTFTPNEKLEMNYVNDKAEEFGQHNFQVKEEPKNESSDDYEMNNHRKTKK 444
>11_06_0459 +
23830204-23830350,23830419-23830592,23830738-23830865,
23830947-23831065,23831136-23831217,23831303-23831441,
23831624-23831778,23831852-23832149,23832325-23832453,
23832529-23832711,23832840-23832899,23832973-23833101,
23833177-23833359,23833446-23833490,23833576-23833665,
23833806-23833892,23833974-23834045,23834120-23834302
Length = 800
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +3
Query: 327 NVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRK 479
N F N ++ V+D+ G H + +E +DDY ++H ++K
Sbjct: 394 NYTFTPNEKLEMNYVNDKAEEFGQHNFQVKEEPKNESSDDYEMNNHRKTKK 444
>11_06_0276 -
21826458-21826640,21826716-21826787,21826869-21826955,
21827096-21827185,21827271-21827315,21827402-21827584,
21827660-21827788,21827862-21827921,21828050-21828232,
21828308-21828436,21828612-21828909,21828983-21829137,
21829320-21829458,21829544-21829625,21829696-21829814,
21829896-21830023,21830169-21830342,21830411-21830557
Length = 800
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +3
Query: 327 NVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRK 479
N F N ++ V+D+ G H + +E +DDY ++H ++K
Sbjct: 394 NYTFTPNEKLEMNYVNDKAEEFGQHNFQVKEEPKNESSDDYEMNNHRKTKK 444
>08_02_1258 -
25670092-25670152,25671124-25671327,25671400-25671611,
25671701-25671749,25671833-25672612,25672696-25672767,
25672907-25672954,25673053-25673127,25673238-25673312,
25673614-25673668,25673931-25674016,25674759-25674988
Length = 648
Score = 27.5 bits (58), Expect = 8.9
Identities = 14/33 (42%), Positives = 15/33 (45%)
Frame = +2
Query: 326 KRGL*REPLQQDRPGRRPDLAIGSARHHRQSGG 424
KRG L PG P + GS RH R GG
Sbjct: 23 KRGRSSPSLPPPPPGPPPQVPHGSKRHRRDEGG 55
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 27.5 bits (58), Expect = 8.9
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = -3
Query: 505 ATRPPALPVFLESGWSLLP*SSAFSWSTTALP 410
A +P A+P + W+ P +A W T A P
Sbjct: 252 AAQPAAIPAQAGADWTAAPAPAAGGWDTAAAP 283
>05_01_0088 +
581619-581854,581890-582035,583143-583263,583593-583773,
583842-584015,584161-584288,584370-584488,584559-584640,
584726-584864,585047-585201,585275-585572,585748-585876,
585952-586134,586263-586322,586396-586524,586600-586782,
586869-586913,586999-587088,587229-587315,587397-587468,
587813-587887
Length = 943
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/51 (25%), Positives = 24/51 (47%)
Frame = +3
Query: 327 NVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRK 479
N F N ++ V+D+ G H + +E +DDY ++H ++K
Sbjct: 573 NYTFTPNEKLEMNYVNDKAEEFGQHNFQVKEEPKNESSDDYEMNNHRKTKK 623
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,403,907
Number of Sequences: 37544
Number of extensions: 400591
Number of successful extensions: 1307
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1478421500
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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