Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20028
         (615 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)               103   2e-22
SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)                57   1e-08
SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)                51   6e-07
SB_6406| Best HMM Match : Mis12 (HMM E-Value=0.49)                     34   0.080
SB_51387| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_49217| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.0  
SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0)                 28   5.2  
SB_14338| Best HMM Match : Spore_permease (HMM E-Value=0.75)           28   5.2  
SB_41181| Best HMM Match : DUF164 (HMM E-Value=2.1)                    28   6.9  
SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)                      28   6.9  
SB_48209| Best HMM Match : DNA_pol_B_2 (HMM E-Value=5.1e-05)           27   9.1  
SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.1  

>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score =  103 bits (246), Expect = 2e-22
 Identities = 44/83 (53%), Positives = 60/83 (72%)
 Frame = +3

Query: 258 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 437
           HFNP  K+HG P+D NRHVGDLGNVV  ++  + ID+ D  ++L G H ++GR+VV+H  
Sbjct: 62  HFNPFKKEHGGPSDENRHVGDLGNVVAGDDGKACIDMTDALVTLVGEHSVVGRSVVVHAD 121

Query: 438 ADDYGKSDHPDSRKTGNAGGRVA 506
            DD G+  H DS+ TG+AGGR+A
Sbjct: 122 EDDLGRGGHEDSKTTGHAGGRLA 144



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 15/31 (48%), Positives = 20/31 (64%)
 Frame = +1

Query: 163 VQGGITGLPPGEYGFHVHEKGDLSGGCLSTG 255
           + G I GL  G +GFH+H  GD + GC+S G
Sbjct: 30  ITGTIEGLKAGNHGFHIHVYGDNTNGCVSAG 60


>SB_55396| Best HMM Match : Sod_Cu (HMM E-Value=1.5e-07)
          Length = 100

 Score = 56.8 bits (131), Expect = 1e-08
 Identities = 27/65 (41%), Positives = 39/65 (60%)
 Frame = +3

Query: 309 HVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRKTGN 488
           HVGDLGN++ ++N  +     D  + +     IIGRA+V+H   DD G+  H  S+ TGN
Sbjct: 1   HVGDLGNIIANQNGRATFRFEDKTVKV---WDIIGRAIVVHADEDDLGRGGHELSKSTGN 57

Query: 489 AGGRV 503
           +G RV
Sbjct: 58  SGARV 62


>SB_580| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 51.2 bits (117), Expect = 6e-07
 Identities = 22/48 (45%), Positives = 32/48 (66%)
 Frame = +3

Query: 282 HGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVV 425
           HG P D +RH+GDLGN+  D N  + + + D  +SL+G   IIGR++V
Sbjct: 2   HGAPEDKDRHLGDLGNIEADANGIADVSITDCLVSLTGQCSIIGRSLV 49


>SB_6406| Best HMM Match : Mis12 (HMM E-Value=0.49)
          Length = 714

 Score = 34.3 bits (75), Expect = 0.080
 Identities = 22/55 (40%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
 Frame = -1

Query: 516 MTPK--RLDRQRCRSSWSPDGHSCRNHQLSRGAPPLCR*CRADPIARSGRLPGRS 358
           MTPK     RQRCRS   P       H LS+  PP+ R   A P+    R   RS
Sbjct: 493 MTPKVSSARRQRCRSEGLPTSERAPRHYLSKRQPPVWRLDLAQPVGPPPRDSVRS 547


>SB_51387| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 214

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +3

Query: 345 NHYSRIDLVDDQISLSGPHGIIG-RAVVLHEKADDYGKSDHP 467
           NH+S   L   + +L GP+   G R +++++K D Y K D P
Sbjct: 111 NHHSTGILKCQRANLKGPNLCAGKRRILIYDKYDKYDKYDFP 152


>SB_49217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 609

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -3

Query: 106 WIERQWRGTAW*SHDEPSPERS 41
           W ER W GT W      +P+RS
Sbjct: 123 WFERGWSGTTWPGRKAGNPQRS 144


>SB_18399| Best HMM Match : AMP-binding (HMM E-Value=0)
          Length = 1381

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = +1

Query: 151 GKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTGLISILNIRTTVIRTMSTV 309
           G + ++ G+T  P      H  +KG L  G +S G  S +  R+TV  T++TV
Sbjct: 775 GLIEIEAGVTLEPDVTLATHRVDKGTLFLGRISIGENSSIGTRSTV--TLNTV 825


>SB_14338| Best HMM Match : Spore_permease (HMM E-Value=0.75)
          Length = 367

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 66  WLHHAVPRHCRSIHRND 116
           WLH A   H R++H+ND
Sbjct: 331 WLHIAASSHSRTVHKND 347


>SB_41181| Best HMM Match : DUF164 (HMM E-Value=2.1)
          Length = 258

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 136 TQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLS 249
           T V +G +HVQ  +T +P G       E  D+  GC++
Sbjct: 58  TDVPEGSIHVQEEMTDVPKGSINVQ-EEITDVPEGCIN 94


>SB_1231| Best HMM Match : UCH (HMM E-Value=1e-13)
          Length = 969

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
 Frame = +3

Query: 258 HFNPEHKDHGHPNDVNRHVGDLGNVVFDE---NHYSRIDLVD-DQISLSGPHGIIGRAVV 425
           H N   +D GH ++    + D  N   DE   +H S  D++D + +  S     + R V 
Sbjct: 218 HRNVHAEDEGHIDEYGCGLHD--NEQLDEEVASHVSGDDIMDVNDLIHSSQSEAVHRNVH 275

Query: 426 LHEKA--DDYGKSDHPDSRKTGNAGGRVA 506
             +K   D+YG   H D +  G A   V+
Sbjct: 276 AEDKGHIDEYGCGLHNDEQSDGEAASHVS 304


>SB_48209| Best HMM Match : DNA_pol_B_2 (HMM E-Value=5.1e-05)
          Length = 974

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 362 RPGRRPDLAIGSARHHRQSGG 424
           RPG RPD  +G+ R +R S G
Sbjct: 857 RPGARPDERVGAGRLYRSSTG 877


>SB_35857| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2680

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -1

Query: 423 PPLCR*CRADPIARSGRLPGRSCCSGSRQ 337
           P  CR C  DP    G LPG  C +GS Q
Sbjct: 606 PSGCRACECDPF---GTLPGSVCDAGSGQ 631


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,159,504
Number of Sequences: 59808
Number of extensions: 419723
Number of successful extensions: 1113
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1112
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)