Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20028
(615 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical pr... 92 3e-19
AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide di... 92 3e-19
AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein. 92 3e-19
X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc sup... 80 1e-15
L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide dism... 80 1e-15
AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxi... 80 1e-15
AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxi... 80 1e-15
U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide... 72 4e-13
Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical pr... 40 0.001
Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical pr... 28 6.1
Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical pr... 28 6.1
AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical... 28 6.1
AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical... 28 6.1
L11247-9|AAK84522.2| 639|Caenorhabditis elegans Hypothetical pr... 27 8.1
>Z27080-4|CAB61015.1| 176|Caenorhabditis elegans Hypothetical
protein F55H2.1 protein.
Length = 176
Score = 91.9 bits (218), Expect = 3e-19
Identities = 41/83 (49%), Positives = 54/83 (65%)
Frame = +3
Query: 258 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 437
H+NP HG P+D NRH+GDLGN+ + + I + D SLSG + IIGR+VV+HEK
Sbjct: 87 HYNPHKLSHGAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEK 146
Query: 438 ADDYGKSDHPDSRKTGNAGGRVA 506
DD G+ S+ TGNAG R+A
Sbjct: 147 TDDLGRGTSDQSKTTGNAGSRLA 169
Score = 50.8 bits (116), Expect = 8e-07
Identities = 24/52 (46%), Positives = 32/52 (61%)
Frame = +1
Query: 100 LSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTG 255
+ TE I G I F Q + + G ++GL G++GFH+HEKGD GCLS G
Sbjct: 36 IPTELI-GTIDFDQ-SGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAG 85
>AB190513-1|BAD51397.1| 221|Caenorhabditis elegans superoxide
dismutase protein.
Length = 221
Score = 91.9 bits (218), Expect = 3e-19
Identities = 41/83 (49%), Positives = 54/83 (65%)
Frame = +3
Query: 258 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 437
H+NP HG P+D NRH+GDLGN+ + + I + D SLSG + IIGR+VV+HEK
Sbjct: 87 HYNPHKLSHGAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEK 146
Query: 438 ADDYGKSDHPDSRKTGNAGGRVA 506
DD G+ S+ TGNAG R+A
Sbjct: 147 TDDLGRGTSDQSKTTGNAGSRLA 169
Score = 50.8 bits (116), Expect = 8e-07
Identities = 24/52 (46%), Positives = 32/52 (61%)
Frame = +1
Query: 100 LSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTG 255
+ TE I G I F Q + + G ++GL G++GFH+HEKGD GCLS G
Sbjct: 36 IPTELI-GTIDFDQ-SGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAG 85
>AB003924-1|BAA28262.1| 176|Caenorhabditis elegans SOD4-1 protein.
Length = 176
Score = 91.9 bits (218), Expect = 3e-19
Identities = 41/83 (49%), Positives = 54/83 (65%)
Frame = +3
Query: 258 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 437
H+NP HG P+D NRH+GDLGN+ + + I + D SLSG + IIGR+VV+HEK
Sbjct: 87 HYNPHKLSHGAPDDSNRHIGDLGNIESPASGDTLISVSDSLASLSGQYSIIGRSVVIHEK 146
Query: 438 ADDYGKSDHPDSRKTGNAGGRVA 506
DD G+ S+ TGNAG R+A
Sbjct: 147 TDDLGRGTSDQSKTTGNAGSRLA 169
Score = 50.8 bits (116), Expect = 8e-07
Identities = 24/52 (46%), Positives = 32/52 (61%)
Frame = +1
Query: 100 LSTETIRGNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTG 255
+ TE I G I F Q + + G ++GL G++GFH+HEKGD GCLS G
Sbjct: 36 IPTELI-GTIDFDQ-SGSFLKLNGSVSGLAAGKHGFHIHEKGDTGNGCLSAG 85
>X77020-1|CAA54318.1| 158|Caenorhabditis elegans copper/zinc
superoxide dismutase protein.
Length = 158
Score = 79.8 bits (188), Expect = 1e-15
Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Frame = +3
Query: 258 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 437
HFNP K HG P RHVGDLGNV + ++I L D ++L GP+ ++GR++V+H
Sbjct: 63 HFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAG 122
Query: 438 ADDYGK---SDHPDSRKTGNAGGRVA 506
DD G+ +S+KTGNAG R A
Sbjct: 123 QDDLGEGVGDKAEESKKTGNAGARAA 148
Score = 61.3 bits (142), Expect = 5e-10
Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Frame = +1
Query: 82 SRAIAVLSTETIRGNITFTQVQDG-KVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTG 255
+RA+AVL ET+ G I TQ + + ++G I GL PG +GFHVH+ GD + GC+S G
Sbjct: 3 NRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAG 61
>L20135-1|AAA28147.1| 158|Caenorhabditis elegans superoxide
dismutase protein.
Length = 158
Score = 79.8 bits (188), Expect = 1e-15
Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Frame = +3
Query: 258 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 437
HFNP K HG P RHVGDLGNV + ++I L D ++L GP+ ++GR++V+H
Sbjct: 63 HFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAG 122
Query: 438 ADDYGK---SDHPDSRKTGNAGGRVA 506
DD G+ +S+KTGNAG R A
Sbjct: 123 QDDLGEGVGDKAEESKKTGNAGARAA 148
Score = 61.3 bits (142), Expect = 5e-10
Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Frame = +1
Query: 82 SRAIAVLSTETIRGNITFTQVQDG-KVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTG 255
+RA+AVL ET+ G I TQ + + ++G I GL PG +GFHVH+ GD + GC+S G
Sbjct: 3 NRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAG 61
>AC006608-8|AAV34795.1| 158|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform b protein.
Length = 158
Score = 79.8 bits (188), Expect = 1e-15
Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Frame = +3
Query: 258 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 437
HFNP K HG P RHVGDLGNV + ++I L D ++L GP+ ++GR++V+H
Sbjct: 63 HFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAG 122
Query: 438 ADDYGK---SDHPDSRKTGNAGGRVA 506
DD G+ +S+KTGNAG R A
Sbjct: 123 QDDLGEGVGDKAEESKKTGNAGARAA 148
Score = 61.3 bits (142), Expect = 5e-10
Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Frame = +1
Query: 82 SRAIAVLSTETIRGNITFTQVQDG-KVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTG 255
+RA+AVL ET+ G I TQ + + ++G I GL PG +GFHVH+ GD + GC+S G
Sbjct: 3 NRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAG 61
>AC006608-7|AAF39759.1| 180|Caenorhabditis elegans Sod (superoxide
dismutase) protein1, isoform a protein.
Length = 180
Score = 79.8 bits (188), Expect = 1e-15
Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 3/86 (3%)
Frame = +3
Query: 258 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 437
HFNP K HG P RHVGDLGNV + ++I L D ++L GP+ ++GR++V+H
Sbjct: 85 HFNPFGKTHGGPKSEIRHVGDLGNVEAGADGVAKIKLTDTLVTLYGPNTVVGRSMVVHAG 144
Query: 438 ADDYGK---SDHPDSRKTGNAGGRVA 506
DD G+ +S+KTGNAG R A
Sbjct: 145 QDDLGEGVGDKAEESKKTGNAGARAA 170
Score = 61.3 bits (142), Expect = 5e-10
Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Frame = +1
Query: 82 SRAIAVLSTETIRGNITFTQVQDG-KVHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTG 255
+RA+AVL ET+ G I TQ + + ++G I GL PG +GFHVH+ GD + GC+S G
Sbjct: 25 NRAVAVLRGETVTGTIWITQKSENDQAVIEGEIKGLTPGLHGFHVHQYGDSTNGCISAG 83
>U42833-3|AAA83577.1| 178|Caenorhabditis elegans Sod (superoxide
dismutase) protein5 protein.
Length = 178
Score = 71.7 bits (168), Expect = 4e-13
Identities = 38/86 (44%), Positives = 51/86 (59%), Gaps = 3/86 (3%)
Frame = +3
Query: 258 HFNPEHKDHGHPNDVNRHVGDLGNVVFDENHYSRIDLVDDQISLSGPHGIIGRAVVLHEK 437
HFNP +HG + V RHVGDLGNV + ++I D +SL G + +IGR++V+H
Sbjct: 83 HFNPCKMNHGGRDSVVRHVGDLGNVEAGADGVAKIKFSDKVVSLFGANTVIGRSMVVHVD 142
Query: 438 ADDYGK---SDHPDSRKTGNAGGRVA 506
DD G+ +S KTGNAG R A
Sbjct: 143 RDDLGQGIDDKAEESLKTGNAGARAA 168
Score = 54.8 bits (126), Expect = 5e-08
Identities = 25/58 (43%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Frame = +1
Query: 85 RAIAVLSTETIRGNITFTQVQDGK-VHVQGGITGLPPGEYGFHVHEKGDLSGGCLSTG 255
RA+AVL + G + TQ +G+ +G I GL PG +GFH+H+ GD + GC S G
Sbjct: 24 RAVAVLRGTAVFGTVWLTQKAEGEETEFEGEIKGLSPGLHGFHIHQYGDSTDGCTSAG 81
>Z81110-6|CAB03260.2| 1011|Caenorhabditis elegans Hypothetical protein
T01D3.3b protein.
Length = 1011
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +1
Query: 61 HHGFTTPSRAIAVLSTETIR--GNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLS 234
H F + A+A+L T G TF+Q+ + + G + LP G + +H+ GD S
Sbjct: 875 HDAFVDDTIAVAILITREGAHIGRFTFSQLTSTALRIHGEVYTLPVGRHAVVLHQFGDSS 934
Query: 235 GGCLSTG 255
GC G
Sbjct: 935 EGCSRVG 941
>Z81110-2|CAB03259.1| 802|Caenorhabditis elegans Hypothetical
protein T01D3.3a protein.
Length = 802
Score = 39.9 bits (89), Expect = 0.001
Identities = 21/67 (31%), Positives = 32/67 (47%), Gaps = 2/67 (2%)
Frame = +1
Query: 61 HHGFTTPSRAIAVLSTETIR--GNITFTQVQDGKVHVQGGITGLPPGEYGFHVHEKGDLS 234
H F + A+A+L T G TF+Q+ + + G + LP G + +H+ GD S
Sbjct: 666 HDAFVDDTIAVAILITREGAHIGRFTFSQLTSTALRIHGEVYTLPVGRHAVVLHQFGDSS 725
Query: 235 GGCLSTG 255
GC G
Sbjct: 726 EGCSRVG 732
>Z82258-4|CAL44968.1| 1467|Caenorhabditis elegans Hypothetical
protein Y37A1B.17b protein.
Length = 1467
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +2
Query: 125 TSHSLRFKMGRFTFR-GASLGCLRV 196
T HSL+ K RFT+R G+SLG +++
Sbjct: 672 TFHSLKKKSNRFTYRMGSSLGVVKL 696
>Z82258-3|CAL44967.1| 1538|Caenorhabditis elegans Hypothetical
protein Y37A1B.17a protein.
Length = 1538
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +2
Query: 125 TSHSLRFKMGRFTFR-GASLGCLRV 196
T HSL+ K RFT+R G+SLG +++
Sbjct: 672 TFHSLKKKSNRFTYRMGSSLGVVKL 696
>AL023835-19|CAL44978.1| 1467|Caenorhabditis elegans Hypothetical
protein Y37A1B.17b protein.
Length = 1467
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +2
Query: 125 TSHSLRFKMGRFTFR-GASLGCLRV 196
T HSL+ K RFT+R G+SLG +++
Sbjct: 672 TFHSLKKKSNRFTYRMGSSLGVVKL 696
>AL023835-18|CAL44977.1| 1538|Caenorhabditis elegans Hypothetical
protein Y37A1B.17a protein.
Length = 1538
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/25 (52%), Positives = 19/25 (76%), Gaps = 1/25 (4%)
Frame = +2
Query: 125 TSHSLRFKMGRFTFR-GASLGCLRV 196
T HSL+ K RFT+R G+SLG +++
Sbjct: 672 TFHSLKKKSNRFTYRMGSSLGVVKL 696
>L11247-9|AAK84522.2| 639|Caenorhabditis elegans Hypothetical
protein F09G8.8 protein.
Length = 639
Score = 27.5 bits (58), Expect = 8.1
Identities = 17/41 (41%), Positives = 20/41 (48%)
Frame = +1
Query: 67 GFTTPSRAIAVLSTETIRGNITFTQVQDGKVHVQGGITGLP 189
G+TTP + I ST T R T T V K G+TG P
Sbjct: 222 GWTTPKQEICTTSTTTTRAPTTTTTVTTVK-----GVTGKP 257
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,865,743
Number of Sequences: 27780
Number of extensions: 299513
Number of successful extensions: 777
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1332243108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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