Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20028
         (615 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         24   1.0  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    24   1.0  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    24   1.0  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   3.1  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   3.1  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   4.1  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    21   7.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   9.6  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 475 GRPATLAVESLGCHRNS 525
           GR ++LAV+SL C+ NS
Sbjct: 183 GRLSSLAVQSLDCNTNS 199


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 475 GRPATLAVESLGCHRNS 525
           GR ++LAV+SL C+ NS
Sbjct: 183 GRLSSLAVQSLDCNTNS 199


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 24.2 bits (50), Expect = 1.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = +1

Query: 475 GRPATLAVESLGCHRNS 525
           GR ++LAV+SL C+ NS
Sbjct: 183 GRLSSLAVQSLDCNTNS 199


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 366 LVDDQISLSGPHGIIGRAVVLHEKADDYGKSDHPDSRK 479
           ++D+ I LSG     G  V+LH       + +  D++K
Sbjct: 401 ILDEPIELSGYRLTAGTVVLLHTWIAGLNEENFKDAKK 438


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 255 SHFNPEHKDHGHPNDVNRHV 314
           S F+ + KD G PND N ++
Sbjct: 345 SSFDFQSKDQGPPNDGNGNI 364


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 482 RQRWRSSRLGVIG 520
           RQ WR SRL  +G
Sbjct: 90  RQSWRDSRLSFLG 102


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = +3

Query: 246 IDWSHFNPEHKDHGHPNDVNR 308
           ++W+  +PE  D G P    R
Sbjct: 117 LEWNAAHPEEDDGGQPRPPGR 137


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +1

Query: 157 VHVQGGITGL 186
           +HV GG+TGL
Sbjct: 205 IHVVGGLTGL 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 168,803
Number of Sequences: 438
Number of extensions: 3721
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18215697
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)