Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20027
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    28   1.1  
SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces po...    28   1.4  
SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual    27   1.9  
SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyce...    27   3.3  
SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit Alp...    26   4.4  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   4.4  
SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces...    26   5.8  
SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyc...    26   5.8  

>SPCC18.03 |||shuttle craft like transcriptional
           regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 9/29 (31%), Positives = 18/29 (62%)
 Frame = +1

Query: 22  VSRRSINASRCPYKLLNEIKINRYFFLWC 108
           + +R+ +A RCPY   N+ + + ++  WC
Sbjct: 233 IEQRNEDAWRCPYCQSNQTETSLHYLCWC 261


>SPBC3B8.03 |||saccharopine dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 450

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 411 SSTLCGWSLEVRGVPSLYHCIVGLGFL 331
           + T+   +L  +G P   HC+V +GFL
Sbjct: 237 AETIIRGTLRYQGFPEFIHCLVDMGFL 263


>SPBC1604.15 |gpi16||pig-T |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 545

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/68 (25%), Positives = 32/68 (47%)
 Frame = +3

Query: 192 EIYCTVVFFIEFTLYREISKPAPRIKEHPADTIVGRSEPATLRCVSEENPNRQYSGIKMA 371
           EI  ++       ++  + K   R+ E+P D   G + P  +  V +EN N +   ++ A
Sbjct: 419 EIQFSIPPHTNLIVHFNVEKTPLRLDEYPPDANRGYNLPPAIISVFDEN-NTKLCSLRTA 477

Query: 372 RLLLLMTT 395
            LL+ + T
Sbjct: 478 ALLMFIPT 485


>SPAC1B3.06c |||UbiE family methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 278

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = -3

Query: 444 RITLRKSNPSSSSTLCGWSLEVRGVPSLYH 355
           RI L  +NP++  +L GW+++ + V    H
Sbjct: 175 RINLHGTNPTAGRSLRGWAIDAKYVAENIH 204


>SPAC23H4.12 |alp13||Clr6 histone deacetylase complex subunit
           Alp13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 337

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = +3

Query: 168 D*TNMQSSEIYCTVVFFIEFTLYREISKPAPRIKEH 275
           D TNM S  I C + +  EF  Y  + K    IKE+
Sbjct: 289 DRTNMDSQSIECLLNYIEEFLKYLVLHKDEYFIKEY 324


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 2/59 (3%)
 Frame = -3

Query: 534 NSKRSVFANASPTGLRATHQ*TPSSLSFLPRITLRKSNP--SSSSTLCGWSLEVRGVPS 364
           +S+ SV + +S T   A    T SS      +    S+P  SSSSTL   SL    +PS
Sbjct: 184 SSQPSVSSTSSSTFSSAAPTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPS 242


>SPCP31B10.02 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 143

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
 Frame = +3

Query: 219 IEFTLYREISK-PAPRIK---EHPADTIVGRSEPATLRCVSEENPNRQYSGIKM 368
           +  TL++E+ K P P+     E     +     PA+LR  S  N +R Y GI++
Sbjct: 1   MHLTLFKELLKQPKPKFHFEIEPNVSFLAVEEGPASLRSYSIGNVSRIYDGIRV 54


>SPAC1142.02c ||SPAC17G6.19c|TPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
 Frame = +1

Query: 502 GSISKNATLTIAV----LRDEFKIEPHDVKVASGE 594
           GSIS+    ++ V    ++D FKI+P ++K  SG+
Sbjct: 21  GSISEEEKESLEVAAQCIQDSFKIKPEEIKPKSGD 55


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,924,852
Number of Sequences: 5004
Number of extensions: 62637
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 170
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)