Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20026
         (653 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    23   1.7  
AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1 ...    22   5.1  
DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc gr...    21   8.9  
AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine recombi...    21   8.9  

>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 8/30 (26%), Positives = 17/30 (56%)
 Frame = +2

Query: 401 VATKEALDAKMETHEEKREAYINELRSRLK 490
           +  +  +D K E H+E+  A + E+R+  +
Sbjct: 172 IVGESVIDEKAEEHKEQFTALVREIRNAFR 201


>AJ223627-1|CAA11500.1|  371|Tribolium castaneum orthodenticle-1
           protein protein.
          Length = 371

 Score = 21.8 bits (44), Expect = 5.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 244 SGESARRGTGTPTGSASITSYARPP 170
           S  +A R   TPTG  + ++ A PP
Sbjct: 210 SPAAAPRSVATPTGIPTPSTSASPP 234


>DQ659253-1|ABG47451.1|  439|Tribolium castaneum imaginal disc
           growth factor 2 protein.
          Length = 439

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +2

Query: 401 VATKEALDAKMETHEEKREAYINELRSRLK 490
           VA  + LD     H E+  + + ELR   K
Sbjct: 180 VAGDKVLDENAAEHREQFVSLVRELRGAFK 209


>AY531876-2|AAT08871.1|  340|Tribolium castaneum tyrosine
           recombinase protein.
          Length = 340

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -3

Query: 57  DKPIINVELFATNTLT 10
           +KP+I+ E+FA   LT
Sbjct: 325 NKPLIHKEIFANAVLT 340


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 107,141
Number of Sequences: 336
Number of extensions: 1680
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16865010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)