Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20026
         (653 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p...    29   0.77 
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    27   2.4  
SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|ch...    26   4.1  
SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces ...    26   5.5  
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    25   9.5  

>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +1

Query: 274 EAEGSRREET*LGS**DGRHCSEDGQDRGGVPHPQRADE*LH 399
           EAE   R +  LG    G+HCSE G      P P+     LH
Sbjct: 320 EAEAKARRDKRLGELLTGKHCSECGTPLYSDPSPEELGIWLH 361


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +3

Query: 72   DAIQLFRSLCRLKVEAMEVETKSTEIRCQEMSKGGLAYE 188
            D   L+  L R +   +E E  ++  +C E  K  L YE
Sbjct: 2536 DEHDLYHGLWRRRANFLETEVATSHEQCHEWEKAQLVYE 2574


>SPAC30.01c |sec72|sec7b|Sec7 domain|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1822

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 72  DAIQLFRSLCRLKVEAMEVETKSTEIRCQEM 164
           DA  +FRS+CRL V     + K + IR Q M
Sbjct: 388 DAFLVFRSMCRLAVRQTSPD-KVSNIRSQAM 417


>SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 144

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
 Frame = +1

Query: 406 HQGGARR--QDGDPRGKTRGLHQRAALPSQ--GSS*GR*KTRLTLEQQTAEVYKAIEDKM 573
           +QG A+R  QD   + KT+    +   P +      G  K + + +    E+Y+  E+K 
Sbjct: 28  YQGKAKRIKQDLILKAKTKKHFYKNVRPEEYIKKGSGERKRKFSKKSHLQELYERSEEKR 87

Query: 574 TTAADKRDENLKKMIE 621
               +K D  ++K +E
Sbjct: 88  RIQQEKEDAKVQKRLE 103


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/51 (31%), Positives = 25/51 (49%)
 Frame = +2

Query: 413 EALDAKMETHEEKREAYINELRSRLKDHLEGVRRPG*PWNSRPRKCTRPSK 565
           + LD K+ +  + +   + E  SRLK  L  + + G   NS+P    RP K
Sbjct: 281 DTLDTKLNSSSKSK---VQEEISRLKSELRDLEKSGGSSNSKP-VVVRPKK 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,902,778
Number of Sequences: 5004
Number of extensions: 29904
Number of successful extensions: 138
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 295793106
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)