Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20026
(653 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1144 + 31222556-31222633,31223238-31227665,31227724-312277... 31 0.80
07_01_0463 + 3502708-3503535 31 1.1
01_06_0042 - 25911662-25911736,25912409-25912607,25913275-259133... 29 2.4
05_01_0186 - 1337657-1337977,1339142-1339203,1339297-1339346,133... 29 4.3
01_06_1419 + 37225007-37225011,37225633-37225852,37226347-372265... 29 4.3
10_08_0510 + 18430580-18431781,18433176-18433554 28 7.5
05_03_0483 + 14585581-14587977 28 7.5
03_06_0769 + 36134298-36134356,36134740-36134919,36134975-361350... 28 7.5
03_05_0048 + 20258561-20259346 28 7.5
>04_04_1144 + 31222556-31222633,31223238-31227665,31227724-31227789,
31227790-31228014,31228097-31228255,31228393-31228551,
31228855-31229013,31229371-31229490,31229604-31229825
Length = 1871
Score = 31.1 bits (67), Expect = 0.80
Identities = 13/26 (50%), Positives = 20/26 (76%)
Frame = +2
Query: 236 LTRKDSSVEEIQEKLKAAEERRRSLE 313
LT+K++ +E+ EKLKAAEE+ S +
Sbjct: 999 LTQKETECQELSEKLKAAEEQAASYQ 1024
>07_01_0463 + 3502708-3503535
Length = 275
Score = 30.7 bits (66), Expect = 1.1
Identities = 15/44 (34%), Positives = 28/44 (63%), Gaps = 2/44 (4%)
Frame = +2
Query: 380 EQTNN--FIVATKEALDAKMETHEEKREAYINELRSRLKDHLEG 505
E+TN+ + A E +D K++ + K+E + +L+ +LK+ LEG
Sbjct: 180 EKTNDPAKLKAKLEKIDTKIQDLQAKKEDILRQLKEQLKEELEG 223
>01_06_0042 -
25911662-25911736,25912409-25912607,25913275-25913348,
25913431-25913580,25913666-25913821,25915378-25915464,
25915706-25915765,25915878-25916414,25917292-25917585
Length = 543
Score = 29.5 bits (63), Expect = 2.4
Identities = 18/48 (37%), Positives = 23/48 (47%)
Frame = +1
Query: 349 QDRGGVPHPQRADE*LHRRHQGGARRQDGDPRGKTRGLHQRAALPSQG 492
+DRGG HP+RA E R +R +GD R +R SQG
Sbjct: 32 EDRGGHRHPERAGEEQERAEDD--KRDEGDGERDAREDKERREGDSQG 77
>05_01_0186 -
1337657-1337977,1339142-1339203,1339297-1339346,
1339447-1339544,1340622-1341002,1341123-1341128,
1341380-1341886,1342039-1342113,1342209-1342397
Length = 562
Score = 28.7 bits (61), Expect = 4.3
Identities = 20/55 (36%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 389 NNFIVATKEALDAKMETHEE-KREAYINELRSRLKDHLEGVRRPG*PWNSRPRKC 550
N+ I EALD ++TH E + + S LKDH GV G N KC
Sbjct: 367 NSMISEAGEALDEYIQTHSEVSHRGVLGNISSILKDH--GVAPTGKGINIGDLKC 419
>01_06_1419 +
37225007-37225011,37225633-37225852,37226347-37226516,
37226615-37226676,37227002-37227207,37227581-37227634
Length = 238
Score = 28.7 bits (61), Expect = 4.3
Identities = 13/45 (28%), Positives = 26/45 (57%)
Frame = +2
Query: 374 RSEQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKDHLEGV 508
RS +++I+ +K + TH+E E+ +NE ++ +K L+ V
Sbjct: 139 RSILKSSYIIVSKRGKFPTLVTHQESLESKVNETKATVKFQLKKV 183
>10_08_0510 + 18430580-18431781,18433176-18433554
Length = 526
Score = 27.9 bits (59), Expect = 7.5
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = -3
Query: 648 LVSSCFAQTLDHLLEVLVTLVGS---CGHLIFDGLVHFRGLLFQGQP 517
+ + C AQT+D +EVL T+V S + ++ +VH G GQP
Sbjct: 123 IAALCKAQTVDKAMEVLTTMVKSGVMPDCMTYNSIVH--GFCSSGQP 167
>05_03_0483 + 14585581-14587977
Length = 798
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Frame = +2
Query: 443 EEKRE---AYINELRSRLKDHLEGVRRPG*PWNSRPRKC 550
+EK E Y R L++HL +RP PW R + C
Sbjct: 530 QEKNEMILVYEYMARGTLREHLYSTKRPPLPWKERLKIC 568
>03_06_0769 +
36134298-36134356,36134740-36134919,36134975-36135007,
36135008-36135128,36135227-36135266,36135811-36135863,
36135937-36135998,36136354-36136506,36136949-36137160,
36137480-36138972,36140560-36141483,36141734-36142043,
36143818-36143874,36144114-36144167,36144452-36144510
Length = 1269
Score = 27.9 bits (59), Expect = 7.5
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +1
Query: 511 KTRLTLEQQTAEVYKAIEDKMTTAADKRDENLKKMIERLRE 633
KTRLT Q+ A+ +A + + A +++E K +ERL++
Sbjct: 775 KTRLTDAQKRAQNLRAYKADLQKAKKEQEEEQIKRLERLKQ 815
>03_05_0048 + 20258561-20259346
Length = 261
Score = 27.9 bits (59), Expect = 7.5
Identities = 20/55 (36%), Positives = 27/55 (49%)
Frame = +1
Query: 256 RRRDPREAEGSRREET*LGS**DGRHCSEDGQDRGGVPHPQRADE*LHRRHQGGA 420
+RR R GS E G+ GR E+G+ GG P P+R E + +GGA
Sbjct: 133 KRRSDRGRGGSCEAEGGDGA--TGRRSGEEGEAAGGRPAPEREKE---KAGRGGA 182
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,555,522
Number of Sequences: 37544
Number of extensions: 243350
Number of successful extensions: 871
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1632177336
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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