Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20026
(653 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical p... 30 1.2
Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical p... 30 1.2
U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromos... 30 1.2
AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical ... 30 1.2
AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein. 29 2.2
AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical... 29 2.2
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 29 2.2
Z50863-5|CAA90738.2| 746|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z50863-4|CAL36493.1| 412|Caenorhabditis elegans Hypothetical pr... 27 8.8
Z49153-2|CAA89023.2| 746|Caenorhabditis elegans Hypothetical pr... 27 8.8
>Z46935-10|CAA87054.1| 1244|Caenorhabditis elegans Hypothetical
protein M106.1 protein.
Length = 1244
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 380 EQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKD 493
EQ N + +E LDAK + HE+ + A +++S+ D
Sbjct: 331 EQINKSLSKDREVLDAKRKEHEDSKAANSKDIQSQSDD 368
>Z46794-13|CAA86786.1| 1244|Caenorhabditis elegans Hypothetical
protein M106.1 protein.
Length = 1244
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 380 EQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKD 493
EQ N + +E LDAK + HE+ + A +++S+ D
Sbjct: 331 EQINKSLSKDREVLDAKRKEHEDSKAANSKDIQSQSDD 368
>U96387-1|AAC47834.1| 1244|Caenorhabditis elegans mitotic chromosome
and X-chromosomeassociated MIX-1 protein protein.
Length = 1244
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 380 EQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKD 493
EQ N + +E LDAK + HE+ + A +++S+ D
Sbjct: 331 EQINKSLSKDREVLDAKRKEHEDSKAANSKDIQSQSDD 368
>AL031266-2|CAA20330.1| 1244|Caenorhabditis elegans Hypothetical
protein M106.1 protein.
Length = 1244
Score = 30.3 bits (65), Expect = 1.2
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = +2
Query: 380 EQTNNFIVATKEALDAKMETHEEKREAYINELRSRLKD 493
EQ N + +E LDAK + HE+ + A +++S+ D
Sbjct: 331 EQINKSLSKDREVLDAKRKEHEDSKAANSKDIQSQSDD 368
>AY157938-1|AAN35200.1| 1751|Caenorhabditis elegans ANC-1 protein.
Length = 1751
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 523 STWSSNALKMILETGAQLVD-VGLAFFLVGLHLGVERLLGGDDEVI 389
S W + + M T A D + LAF L HLGV RLL +D +I
Sbjct: 263 SRWRPDVISMREVTNANPRDNLELAFNLAHQHLGVRRLLAVEDMMI 308
>AL132948-15|CAD31816.1| 1352|Caenorhabditis elegans Hypothetical
protein Y39B6A.18 protein.
Length = 1352
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/73 (26%), Positives = 32/73 (43%)
Frame = +2
Query: 242 RKDSSVEEIQEKLKAAEERRRSLEXXXXXXXXXXXXXXXXXSRIRSEQTNNFIVATKEAL 421
RK+ EE EKL A ER R+++ R+++E+ + KE
Sbjct: 862 RKEKEAEEENEKLIAERERMRAIKEEEERVKAEREKVKKEEERLKAEEEK--VKVEKERN 919
Query: 422 DAKMETHEEKREA 460
K++ EE+ +A
Sbjct: 920 KEKVKAEEERLKA 932
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 29.5 bits (63), Expect = 2.2
Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 523 STWSSNALKMILETGAQLVD-VGLAFFLVGLHLGVERLLGGDDEVI 389
S W + + M T A D + LAF L HLGV RLL +D +I
Sbjct: 263 SRWRPDVISMREVTNANPRDNLELAFNLAHQHLGVRRLLAVEDMMI 308
>Z50863-5|CAA90738.2| 746|Caenorhabditis elegans Hypothetical
protein C14H10.2a protein.
Length = 746
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 511 KTRLTLEQQTAEVYKAIEDKMTTAADKRDENLKKMIERLRE 633
K + T+E Q AE+ K EDK AD++ +NL+K R+
Sbjct: 528 KLKATVELQQAEIEKMHEDK--KEADQKFKNLEKEYAAYRD 566
>Z50863-4|CAL36493.1| 412|Caenorhabditis elegans Hypothetical
protein C14H10.2b protein.
Length = 412
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 511 KTRLTLEQQTAEVYKAIEDKMTTAADKRDENLKKMIERLRE 633
K + T+E Q AE+ K EDK AD++ +NL+K R+
Sbjct: 194 KLKATVELQQAEIEKMHEDK--KEADQKFKNLEKEYAAYRD 232
>Z49153-2|CAA89023.2| 746|Caenorhabditis elegans Hypothetical
protein C14H10.2a protein.
Length = 746
Score = 27.5 bits (58), Expect = 8.8
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 511 KTRLTLEQQTAEVYKAIEDKMTTAADKRDENLKKMIERLRE 633
K + T+E Q AE+ K EDK AD++ +NL+K R+
Sbjct: 528 KLKATVELQQAEIEKMHEDK--KEADQKFKNLEKEYAAYRD 566
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,991,822
Number of Sequences: 27780
Number of extensions: 184998
Number of successful extensions: 710
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 708
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1455289764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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