Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20026
         (653 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela...    31   0.67 
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila...    30   1.5  
At1g76810.1 68414.m08938 eukaryotic translation initiation facto...    29   3.6  
At1g76720.1 68414.m08929 eukaryotic translation initiation facto...    29   3.6  
At1g40133.1 68414.m04768 hypothetical protein                          29   3.6  
At2g18810.1 68415.m02189 hypothetical protein contains Pfam prof...    28   6.2  
At5g08780.1 68418.m01041 histone H1/H5 family protein contains P...    27   8.2  

>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
           similar to nuclear matrix constituent protein 1 (NMCP1)
           [Daucus carota] GI:2190187
          Length = 1128

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 28/93 (30%), Positives = 44/93 (47%), Gaps = 1/93 (1%)
 Frame = +2

Query: 236 LTRKDSSVEEIQEKLKAAEERRRSLE-XXXXXXXXXXXXXXXXXSRIRSEQTNNFIVATK 412
           L  K  +++E +EK+  AEE+R SLE                   +IR+E T    +  +
Sbjct: 446 LEAKLKTIKE-REKIIQAEEKRLSLEKQQLLSDKESLEDLQQEIEKIRAEMTKKEEMIEE 504

Query: 413 EALDAKMETHEEKREAYINELRSRLKDHLEGVR 511
           E     +E  +E+RE Y+  L+S LK  +E  R
Sbjct: 505 EC--KSLEIKKEEREEYL-RLQSELKSQIEKSR 534


>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
           to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
           sylvestris]; contains Pfam profile: PF00076 RNA
           recognition motif. (a.k.a. RRM, RBD, or RNP domain)
          Length = 245

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 406 HQGGARRQDGDPRGKTRGLHQRAALPSQGSS*G 504
           HQGGA R +   RG+ RG  +  + PS G   G
Sbjct: 86  HQGGAGRDNDGDRGRDRGYDRDRSRPSGGRGGG 118


>At1g76810.1 68414.m08938 eukaryotic translation initiation factor 2
           family protein / eIF-2 family protein similar to IF2
           protein [Drosophila melanogaster] GI:7108770; contains
           Pfam profile PF03144: Elongation factor Tu domain 2
          Length = 1294

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = +2

Query: 260 EEIQEKLKAAEERRRSLEXXXXXXXXXXXXXXXXXSRIRSEQTNNFIVATK---EALDAK 430
           +E +E+ K  EE +   E                  R R E+    ++  K   + L AK
Sbjct: 424 QEAEERKKKEEEEKLRKEEEERRRQEELEAQAEEAKRKRKEKEKEKLLRKKLEGKLLTAK 483

Query: 431 METHEEKREAYINEL 475
            +T  +KREA+ N+L
Sbjct: 484 QKTEAQKREAFKNQL 498


>At1g76720.1 68414.m08929 eukaryotic translation initiation factor 2
           family protein / eIF-2 family protein similar to
           SP|O60841 Translation initiation factor IF-2 {Homo
           sapiens}; contains Pfam profiles PF00009: Elongation
           factor Tu GTP binding domain, PF03144: Elongation factor
           Tu domain 2
          Length = 1201

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = +2

Query: 260 EEIQEKLKAAEERRRSLEXXXXXXXXXXXXXXXXXSRIRSEQTNNFIVATK---EALDAK 430
           +E +E+ K  EE +   E                  R R E+    ++  K   + L AK
Sbjct: 377 QEAEERKKKEEEEKLRKEEEERRRQEELEAQAEEAKRKRKEKEKEKLLRKKLEGKLLTAK 436

Query: 431 METHEEKREAYINEL 475
            +T  +KREA+ N+L
Sbjct: 437 QKTEAQKREAFKNQL 451


>At1g40133.1 68414.m04768 hypothetical protein
          Length = 663

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +2

Query: 383 QTNNFIVATKEALDAKMETHEEKREAYINE 472
           + NN   A  +A  AKME  E +REA++N+
Sbjct: 474 EANNRDEALSQAAAAKMEKEEVEREAFVNK 503


>At2g18810.1 68415.m02189 hypothetical protein contains Pfam profile
           PF03754: Domain of unknown function (DUF313)
          Length = 234

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -2

Query: 562 RWPCTLPRSAVPGSTWSSNALKMILETGAQL 470
           RW  T   + V GS W+    + ILETG +L
Sbjct: 136 RWDMTSTSNYVLGSGWNKVVTENILETGTRL 166


>At5g08780.1 68418.m01041 histone H1/H5 family protein contains Pfam
           domain, PF00538: linker histone H1 and H5 family
          Length = 457

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 111 VEAMEVETKSTEIRCQEMSKGGLAYEV 191
           VE ++VE    E R +  S+GG  YEV
Sbjct: 229 VEVVDVENSENEARIEANSRGGELYEV 255


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,439,798
Number of Sequences: 28952
Number of extensions: 174179
Number of successful extensions: 653
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 634
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1363910256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)