Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20025
         (670 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    75   5e-16
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.1  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.1  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.1  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.1  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.1  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    22   6.1  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    22   6.1  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    22   6.1  

>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 75.4 bits (177), Expect = 5e-16
 Identities = 34/88 (38%), Positives = 53/88 (60%), Gaps = 2/88 (2%)
 Frame = +2

Query: 245 FHCPFFGCCGAVKENHCMIITFSVFLLIIFVAELAVGIAGY--MKHTDLEDSVMRNLNAS 418
           F   FFGCCGA++E+HCM ITF+ FLL I + ++AV +  +  +K+ D   ++       
Sbjct: 63  FVISFFGCCGAIRESHCMTITFASFLLFILLVQIAVAVYAFIVVKNDDNFRNISEKYQEI 122

Query: 419 ITQYPVDKNVQKTIDIIQTDLQCCGINS 502
              Y ++   +  ID IQ +LQCCG++S
Sbjct: 123 FNGYFLNSESKDFIDFIQKNLQCCGVHS 150



 Score = 37.9 bits (84), Expect = 9e-05
 Identities = 15/28 (53%), Positives = 21/28 (75%)
 Frame = +3

Query: 66  GMSCVKYLMFCFNLLFAITGLIILIVGI 149
           GM  +KYL+F FN +FA+ GL IL +G+
Sbjct: 4   GMGMIKYLLFIFNFVFAVCGLGILTLGV 31



 Score = 23.4 bits (48), Expect = 2.0
 Identities = 11/35 (31%), Positives = 18/35 (51%)
 Frame = +1

Query: 529 PIPSTCCSAQEINDGVVAACTENSTNXPLRRDVLL 633
           PIP++CC++ E N   ++    N     L+  V L
Sbjct: 158 PIPASCCNSPENNTCSISNSYTNGCVEALKDTVKL 192


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +2

Query: 71  VLCKVPHVLLQ 103
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +2

Query: 71  VLCKVPHVLLQ 103
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +2

Query: 71  VLCKVPHVLLQ 103
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +2

Query: 71  VLCKVPHVLLQ 103
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +2

Query: 71  VLCKVPHVLLQ 103
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +2

Query: 71  VLCKVPHVLLQ 103
           +LC+ PH+++Q
Sbjct: 451 ILCRAPHIIVQ 461


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +2

Query: 71  VLCKVPHVLLQ 103
           +LC+ PH+++Q
Sbjct: 519 ILCRAPHIIVQ 529


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 5/11 (45%), Positives = 10/11 (90%)
 Frame = +2

Query: 71  VLCKVPHVLLQ 103
           +LC+ PH+++Q
Sbjct: 519 ILCRAPHIIVQ 529


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,280
Number of Sequences: 438
Number of extensions: 3822
Number of successful extensions: 14
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20221290
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)