Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20024
(685 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 29 0.47
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub... 29 0.83
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ... 27 3.3
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 26 4.4
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 26 5.8
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 26 5.8
SPAC3C7.12 |tip1|noc1|CLIP170 family protein Tip1|Schizosaccharo... 26 5.8
SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual 25 7.7
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 25 7.7
SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6 |Schizosaccharom... 25 7.7
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 29.5 bits (63), Expect = 0.47
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 508 DLEVNSVVFQHGGKLPGDFLAGFVFGVTECNFVV 407
DLE N +V Q+ G G+FL G FG + FV+
Sbjct: 411 DLEENRIVRQYMGHKLGNFLIGSCFGGKDDTFVL 444
>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 28.7 bits (61), Expect = 0.83
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -2
Query: 639 FVHGGLKVPVVFEGVSGAITVDDTVIT 559
F H + V G+ GAIT+DD++IT
Sbjct: 107 FCHLSIGQEAVAAGIEGAITLDDSIIT 133
>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1237
Score = 26.6 bits (56), Expect = 3.3
Identities = 11/40 (27%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 120 ELYMSVVIGEY-ETAIAKCSEYLKEKKGEVIKEAVKRLIE 236
++++++V+ Y A+ EYL+EK I + K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.2 bits (55), Expect = 4.4
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = -1
Query: 202 SPFFSFRYSEHLAIAVSYSPMTTLIYSSPP 113
+PFF +S HL S S + + YS PP
Sbjct: 343 APFFPLGFSPHLNDESSRSRWSNISYSPPP 372
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 356 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 448
L+ K+D A K+ DQ H K+ +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.8 bits (54), Expect = 5.8
Identities = 18/51 (35%), Positives = 21/51 (41%)
Frame = +2
Query: 470 TPVLENNRVYFKICPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTL 622
+P NN VY PPR N T + VL S PSN+ TL
Sbjct: 313 SPPKPNNPVYL---PPRGNPTVNDRVSNVLPSITSFDSSVTTVPSNSPATL 360
>SPAC3C7.12 |tip1|noc1|CLIP170 family protein
Tip1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 433 QRQNQQESLLEVYPRVGKQQSLLQDLSTEDKQYLKLDNTKGSSDDRI 573
+RQN Q+ L EV V + QSL+ + + + + +L ++RI
Sbjct: 148 ERQNHQQQLEEVLATVDQLQSLVTNFNDQQDEVDELRERITLKEERI 194
>SPBC83.09c |||GYF domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 7.7
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +3
Query: 210 KEAVKRLIENGKRNTWTSPTSY 275
+E+++R+ + N+W+SP SY
Sbjct: 318 RESLQRIYQKLTSNSWSSPVSY 339
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1647
Score = 25.4 bits (53), Expect = 7.7
Identities = 12/39 (30%), Positives = 23/39 (58%)
Frame = -1
Query: 406 VLLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 290
V+L+ + G + + L LL +D +++ +V FDDF+
Sbjct: 1284 VVLLQDIHGCLTAWA-RLTGLLVDDCNEVISDVHFDDFI 1321
>SPBC211.04c |mcm6|mis5|MCM complex subunit Mcm6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 892
Score = 25.4 bits (53), Expect = 7.7
Identities = 23/108 (21%), Positives = 47/108 (43%), Gaps = 6/108 (5%)
Frame = +1
Query: 379 RPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSLLQDLSTEDKQYLKLDNTKGS 558
RP V P++P+ + + L+ + + + +G+ + D + E + +
Sbjct: 28 RPTVSMPSQPESSAM--LEDDGMVKR--KPFAAIGEAIPKVIDTTGESVREAFEEFLLSF 83
Query: 559 SDDRIIYGDSTADTFKHHWYLEP----SMYESDVMFFVYNR--EYNSV 684
SDDR+ GD+ + +Y++ +MYE ++ Y YN V
Sbjct: 84 SDDRVAGGDALPSASQEKYYVQQIHGLAMYEIHTVYVDYKHLTSYNDV 131
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,276
Number of Sequences: 5004
Number of extensions: 59897
Number of successful extensions: 260
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 248
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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