Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20024
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0259 - 1996427-1998772 31 0.85
11_06_0723 - 26688378-26688385,26689351-26689569,26690100-266901... 30 1.5
12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649 29 2.6
05_01_0458 + 3630218-3630274,3630383-3630507,3630635-3630710,363... 29 3.4
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132 29 4.5
06_01_1082 - 8847795-8848033,8848511-8848724 28 6.0
05_03_0618 - 16262826-16263097,16263111-16263183 28 6.0
10_01_0030 - 386008-388056,388166-388360,388931-389062,389167-38... 28 7.9
08_01_0692 + 6121443-6122266,6122812-6124798 28 7.9
01_06_0661 - 30977760-30977783,30977944-30978014,30978045-30979464 28 7.9
>03_01_0259 - 1996427-1998772
Length = 781
Score = 31.1 bits (67), Expect = 0.85
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +2
Query: 332 IFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSK 436
I ++ V++ N HHALKLI + + +I GDSK
Sbjct: 732 ILVKKNVRICN-HCHHALKLISRYSGRRIVVGDSK 765
>11_06_0723 -
26688378-26688385,26689351-26689569,26690100-26690106,
26690194-26690256,26690329-26690400,26690507-26691681,
26692024-26692626,26692643-26692781
Length = 761
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/58 (27%), Positives = 33/58 (56%)
Frame = +1
Query: 379 RPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSLLQDLSTEDKQYLKLDNTK 552
RP R +R L+ + QQES +EV R ++++ +++ ++DKQ + + N++
Sbjct: 580 RPPSLRKQSKLDQVVRRLRMKKQQESTIEVQSR-RRRKTRTKNVISKDKQLINIQNSR 636
>12_02_0367 - 18053979-18054618,18055844-18055988,18056049-18056649
Length = 461
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -1
Query: 400 LVDQLEGVMVPFVYELDSLLGEDHSKLDG 314
+V GVM P + +L LLGE+++KL G
Sbjct: 7 IVGATTGVMKPLLSKLTKLLGEEYAKLKG 35
>05_01_0458 +
3630218-3630274,3630383-3630507,3630635-3630710,
3630884-3630985,3631075-3631290,3632217-3632297,
3633152-3633235,3633405-3633509,3634338-3634516,
3634681-3634765,3634889-3635090,3635165-3635234,
3635353-3635422,3635745-3635834,3636020-3636088,
3636520-3636618,3636804-3636914
Length = 606
Score = 29.1 bits (62), Expect = 3.4
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 156 TAIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTWT 260
T + + E L E K E ++RL ENGK WT
Sbjct: 410 TEVVRLIELLDEAKSRSKSELLQRLTENGKIVDWT 444
>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
Length = 5436
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/20 (65%), Positives = 16/20 (80%)
Frame = +1
Query: 250 TPGLRLPVMDKGWKGNRQIL 309
TPGLR VMD+GW N++IL
Sbjct: 4968 TPGLRTNVMDQGW--NKKIL 4985
>06_01_1082 - 8847795-8848033,8848511-8848724
Length = 150
Score = 28.3 bits (60), Expect = 6.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +1
Query: 613 WYLEPSMYESDVMFFVYNREYNSV 684
W + Y DV+ F YN+EY+ V
Sbjct: 59 WLAGKTFYAGDVLVFKYNKEYHDV 82
>05_03_0618 - 16262826-16263097,16263111-16263183
Length = 114
Score = 28.3 bits (60), Expect = 6.0
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -2
Query: 102 SSWCKCGVRSQRTHGEDEGKQSQSHLGAV 16
S C+CG+RS+R +E + + LG V
Sbjct: 24 SGHCRCGLRSRRCTAREEFRSKEEMLGIV 52
>10_01_0030 -
386008-388056,388166-388360,388931-389062,389167-389538,
389753-389894,392274-392533,392737-393015,394796-394939
Length = 1190
Score = 27.9 bits (59), Expect = 7.9
Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 3/100 (3%)
Frame = +2
Query: 185 EGKEGRGYQGSREASDRKRQEEHLDFAYQLWTKDGKEIVKSYFPIQFRVIFTEQTVKLIN 364
E KE R + RE K +E+ L +L K+ KE K P+Q + + L N
Sbjct: 515 EEKEKREEEERRERRRTKEREKKLRRKERLKEKE-KE--KEKIPVQLKPYIGTSSSPLSN 571
Query: 365 KRDHHALKLIDQQN---HNKIAFGDSKDKTSKKVSWKFTP 475
A + DQ H+K + D +DK S V+ F+P
Sbjct: 572 S----ATPINDQSPDIAHSKYSASDDEDKDSIVVTESFSP 607
>08_01_0692 + 6121443-6122266,6122812-6124798
Length = 936
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/38 (34%), Positives = 23/38 (60%)
Frame = -1
Query: 403 LLVDQLEGVMVPFVYELDSLLGEDHSKLDGEVRFDDFL 290
++V GVM P + +L +L+G+++ KL G + FL
Sbjct: 7 IVVSASMGVMKPLLAKLTTLMGDEYKKLKGVRKQVSFL 44
>01_06_0661 - 30977760-30977783,30977944-30978014,30978045-30979464
Length = 504
Score = 27.9 bits (59), Expect = 7.9
Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 1/99 (1%)
Frame = +2
Query: 149 IRDRYRQML*ISEGKEGRGYQGSREASDRKRQ-EEHLDFAYQLWTKDGKEIVKSYFPIQF 325
I+D+YR+M+ G G ++G R RQ ++ + W + G+ V
Sbjct: 166 IKDKYRRMVPRDRGSRGERFRGERFDKPEVRQWSRQENWGRKTWKEAGESTVPKMVGQGV 225
Query: 326 RVIFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKDK 442
+ + +RD +AL + + + + ++ KDK
Sbjct: 226 YGVGPVLAALMAERRDFYALYIQEGMDFS-VSNKKKKDK 263
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,444,471
Number of Sequences: 37544
Number of extensions: 391466
Number of successful extensions: 1350
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1304
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1350
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -