Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20024
         (685 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.093
SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_27215| Best HMM Match : PPR (HMM E-Value=3.2)                       30   1.5  
SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)                 29   4.6  
SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015)                  28   8.1  
SB_13749| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 34.3 bits (75), Expect = 0.093
 Identities = 25/91 (27%), Positives = 45/91 (49%)
 Frame = +1

Query: 331 DLHRADCQAHKQKGPSRPQVDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSLLQDL 510
           DLH  + Q  +Q G     + +  + QQ   + LQ+Q QQ+   ++  +  KQ S+ + L
Sbjct: 558 DLHEEEVQHQQQFGLQEQSLGQEQRKQQ---QQLQQQQQQKQQQQLQKKQQKQSSMEEKL 614

Query: 511 STEDKQYLKLDNTKGSSDDRIIYGDSTADTF 603
           S+E ++ + L    GSS +  +    + D F
Sbjct: 615 SSEIEK-MTLATGDGSSKEGSLMDPVSVDEF 644


>SB_31262| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 358

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 423 SVTPKTKPARKSPGSLPPCWKTTEFTSRSVHRGQTVPEAR 542
           S++P +   R S GSL P  +T+  TSRS  R ++   AR
Sbjct: 179 SISPASPALRSSLGSLAPTSRTSTPTSRSTPRSRSRSRAR 218


>SB_27215| Best HMM Match : PPR (HMM E-Value=3.2)
          Length = 603

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = -2

Query: 636 VHGGLKVPVVFEGVSGAITVDDTVITRTFRVIELQVLFVLGGQILK*TLLFSNTGVNFQE 457
           ++ G K  +VF+ VS ++ + ++          + V FVL G  ++  L F  + +NF+E
Sbjct: 283 INSGKKAEMVFDYVSDSLELQESFWRFFVPEHSISVPFVLVGHTVEPALSFDRSHINFRE 342

Query: 456 TFL 448
             L
Sbjct: 343 MLL 345


>SB_50057| Best HMM Match : NACHT (HMM E-Value=1.4e-08)
          Length = 1555

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 20/82 (24%), Positives = 34/82 (41%)
 Frame = +2

Query: 362  NKRDHHALKLIDQQNHNKIAFGDSKDKTSKKVSWKFTPVLENNRVYFKICPPRTNST*SS 541
            N  D H  K  D  N+N  +F    +K +  +         NN  + K+C  R+ +T + 
Sbjct: 1456 NNNDTHYNKNTDDNNNN--SFVRYVNKNNNNIHHNKNTDDNNNNSFVKLCQGRSTTTITI 1513

Query: 542  ITRKVLVMTVSSTVIAPLTPSN 607
             T     MT  +T ++    +N
Sbjct: 1514 FTITKTPMTTITTALSRYVNNN 1535


>SB_25230| Best HMM Match : NACHT (HMM E-Value=0.0015)
          Length = 1238

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 19/59 (32%), Positives = 32/59 (54%), Gaps = 1/59 (1%)
 Frame = +2

Query: 248  EHLDFAYQLWTKDGKEIVKSY-FPIQFRVIFTEQTVKLINKRDHHALKLIDQQNHNKIA 421
            EHL   Y L TK   EIVK++ F    ++   ++ V++ NK   +  KL  +++ +K A
Sbjct: 1020 EHLANIYHLMTKTKSEIVKNHNFVTMSQLEEDKEIVQIGNKSLSYRNKLQGEEHEHKKA 1078


>SB_13749| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 300

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 23/67 (34%), Positives = 33/67 (49%)
 Frame = +1

Query: 430 LQRQNQQESLLEVYPRVGKQQSLLQDLSTEDKQYLKLDNTKGSSDDRIIYGDSTADTFKH 609
           ++RQN QES++ V     K++S+L    + D  +  L+ T G S      GDS   TF  
Sbjct: 81  VKRQNSQESVVNVPSPDPKRRSMLNSQGSNDSSH-SLNRTSGYSHQS---GDSN-PTFS- 134

Query: 610 HWYLEPS 630
            W  E S
Sbjct: 135 EWTEEQS 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,341,780
Number of Sequences: 59808
Number of extensions: 463348
Number of successful extensions: 1561
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1445
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1558
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)