Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20024
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical...    32   0.44 
L07143-1|AAB37089.2|  532|Caenorhabditis elegans P granule abnor...    28   7.1  
AB120730-1|BAC87887.1|  532|Caenorhabditis elegans PGL-2 protein.      28   7.1  
Z93382-12|CAB07620.2| 1238|Caenorhabditis elegans Hypothetical p...    27   9.4  
Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z81062-8|CAD59145.1|  808|Caenorhabditis elegans Hypothetical pr...    27   9.4  
Z81062-7|CAB02942.1|  755|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U80447-7|AAB37811.1|  518|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helical...    27   9.4  
U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helical...    27   9.4  
D83665-1|BAA20550.1| 1238|Caenorhabditis elegans copper transpor...    27   9.4  
AL032665-3|CAA21773.2| 1238|Caenorhabditis elegans Hypothetical ...    27   9.4  
AF047659-5|AAC04429.1|  347|Caenorhabditis elegans Hypothetical ...    27   9.4  
AF006635-1|AAB62695.1| 1116|Caenorhabditis elegans P-type ATPase...    27   9.4  

>AC024202-12|AAF36031.2|  143|Caenorhabditis elegans Hypothetical
           protein Y71H2B.1 protein.
          Length = 143

 Score = 31.9 bits (69), Expect = 0.44
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +3

Query: 123 LYMSVVIGEYETAIA-KCSEYLKEKKGEVIKEAVKRLIE 236
           LYM   +G+Y+   A KC +Y K+  G+   EA++  I+
Sbjct: 87  LYMQATVGDYDGNTALKCGQYWKKHSGKTQIEAIREYIK 125


>L07143-1|AAB37089.2|  532|Caenorhabditis elegans P granule
           abnormality protein 2 protein.
          Length = 532

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 284 PLSITGRRSPGVPLAVFDQTLHGFLDNLSLLFLQIFRAF 168
           P+ I  R  PG+ + V   TLH FL  L  +FL   + F
Sbjct: 287 PVEIKNRMFPGIRIRVLQDTLH-FLHQLFKVFLNESQKF 324


>AB120730-1|BAC87887.1|  532|Caenorhabditis elegans PGL-2 protein.
          Length = 532

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = -3

Query: 284 PLSITGRRSPGVPLAVFDQTLHGFLDNLSLLFLQIFRAF 168
           P+ I  R  PG+ + V   TLH FL  L  +FL   + F
Sbjct: 287 PVEIKNRMFPGIRIRVLQDTLH-FLHQLFKVFLNESQKF 324


>Z93382-12|CAB07620.2| 1238|Caenorhabditis elegans Hypothetical
           protein Y76A2A.2 protein.
          Length = 1238

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = -2

Query: 657 EEHDVAFVHGGLKVPVVFEGVSGAITVDDTVIT-RTFRVIELQVLFVLGGQI-LK*TLLF 484
           + +D+  V  G KVPV    V G  +VD++ IT  +  V++     V+GG +  K  L+ 
Sbjct: 591 QRNDLIKVVPGAKVPVDGVVVDGKSSVDESFITGESMPVVKKPGSTVIGGSVNQKGVLIV 650

Query: 483 SNTGVNFQETFLLVLSL 433
             T V    T   ++ L
Sbjct: 651 KATHVGNDSTLSQIVRL 667


>Z81068-8|CAB02988.1|  490|Caenorhabditis elegans Hypothetical
           protein F25H5.7 protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 126 YMSVVIGEYETAIAKCSEYLKEKKGEVIK 212
           Y+ ++   +E  + KC+ Y  EK GEV+K
Sbjct: 270 YVLMLCTLFEGGVEKCALYYPEKLGEVVK 298


>Z81062-8|CAD59145.1|  808|Caenorhabditis elegans Hypothetical
           protein F15A4.8b protein.
          Length = 808

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 512 PPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTT 613
           PP  ++T + +T+      V ST IAP+T  +TT
Sbjct: 437 PPVESTTTAPVTKSSSTPPVKSTTIAPVTMPSTT 470


>Z81062-7|CAB02942.1|  755|Caenorhabditis elegans Hypothetical
           protein F15A4.8a protein.
          Length = 755

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 512 PPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTT 613
           PP  ++T + +T+      V ST IAP+T  +TT
Sbjct: 400 PPVESTTTAPVTKSSSTPPVKSTTIAPVTMPSTT 433


>U80447-7|AAB37811.1|  518|Caenorhabditis elegans Hypothetical
           protein F55F8.7 protein.
          Length = 518

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 126 YMSVVIGEYETAIAKCSEYLKEKKGEVIK 212
           Y+ ++   +E  + KC+ Y  EK GEV+K
Sbjct: 271 YVLMLCTLFEGGVEKCALYYPEKLGEVVK 299


>U64858-3|AAN84865.1| 1250|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform b
            protein.
          Length = 1250

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
 Frame = +2

Query: 329  VIFTEQTVKLIN-----KRDHHALKLIDQQNHNKIAFGDSK---DKTSKKVSWKFTPVLE 484
            ++ T++ +K++N     +R  H L L      +KI F D     D +   + W  +P LE
Sbjct: 911  IVQTDKKLKVVNVATELERVDHILPLRYATISHKIEFSDEIKFIDGSKTNLQWTLSPPLE 970

Query: 485  NNRVYFKI 508
               V FK+
Sbjct: 971  AGTVLFKV 978


>U64858-1|AAN84864.1| 2456|Caenorhabditis elegans Roller: helically
            twisted, animalsroll when moving protein 3, isoform a
            protein.
          Length = 2456

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/68 (27%), Positives = 32/68 (47%), Gaps = 8/68 (11%)
 Frame = +2

Query: 329  VIFTEQTVKLIN-----KRDHHALKLIDQQNHNKIAFGDSK---DKTSKKVSWKFTPVLE 484
            ++ T++ +K++N     +R  H L L      +KI F D     D +   + W  +P LE
Sbjct: 911  IVQTDKKLKVVNVATELERVDHILPLRYATISHKIEFSDEIKFIDGSKTNLQWTLSPPLE 970

Query: 485  NNRVYFKI 508
               V FK+
Sbjct: 971  AGTVLFKV 978


>D83665-1|BAA20550.1| 1238|Caenorhabditis elegans copper
           transporting ATPase protein.
          Length = 1238

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = -2

Query: 657 EEHDVAFVHGGLKVPVVFEGVSGAITVDDTVIT-RTFRVIELQVLFVLGGQI-LK*TLLF 484
           + +D+  V  G KVPV    V G  +VD++ IT  +  V++     V+GG +  K  L+ 
Sbjct: 591 QRNDLIKVVPGAKVPVDGVVVDGKSSVDESFITGESMPVVKKPGSTVIGGSVNQKGVLIV 650

Query: 483 SNTGVNFQETFLLVLSL 433
             T V    T   ++ L
Sbjct: 651 KATHVGNDSTLSQIVRL 667


>AL032665-3|CAA21773.2| 1238|Caenorhabditis elegans Hypothetical
           protein Y76A2A.2 protein.
          Length = 1238

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = -2

Query: 657 EEHDVAFVHGGLKVPVVFEGVSGAITVDDTVIT-RTFRVIELQVLFVLGGQI-LK*TLLF 484
           + +D+  V  G KVPV    V G  +VD++ IT  +  V++     V+GG +  K  L+ 
Sbjct: 591 QRNDLIKVVPGAKVPVDGVVVDGKSSVDESFITGESMPVVKKPGSTVIGGSVNQKGVLIV 650

Query: 483 SNTGVNFQETFLLVLSL 433
             T V    T   ++ L
Sbjct: 651 KATHVGNDSTLSQIVRL 667


>AF047659-5|AAC04429.1|  347|Caenorhabditis elegans Hypothetical
           protein K07H8.8 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 19/67 (28%), Positives = 30/67 (44%)
 Frame = +2

Query: 260 FAYQLWTKDGKEIVKSYFPIQFRVIFTEQTVKLINKRDHHALKLIDQQNHNKIAFGDSKD 439
           FA Q W  D K  +K+   IQ+    TE+   + N       + + ++N N++    SK 
Sbjct: 244 FAPQTWYCDMKNNIKNSTVIQYSSTGTEKIKMIDNLLTVFKNRNVPEENLNEVREELSKG 303

Query: 440 KTSKKVS 460
           KT    S
Sbjct: 304 KTQHSTS 310


>AF006635-1|AAB62695.1| 1116|Caenorhabditis elegans P-type ATPase
           protein.
          Length = 1116

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 23/77 (29%), Positives = 37/77 (48%), Gaps = 2/77 (2%)
 Frame = -2

Query: 657 EEHDVAFVHGGLKVPVVFEGVSGAITVDDTVIT-RTFRVIELQVLFVLGGQI-LK*TLLF 484
           + +D+  V  G KVPV    V G  +VD++ IT  +  V++     V+GG +  K  L+ 
Sbjct: 469 QRNDLLKVVPGAKVPVDGVVVDGKSSVDESFITGESMPVVKKPGSTVIGGSVNQKGVLIV 528

Query: 483 SNTGVNFQETFLLVLSL 433
             T V    T   ++ L
Sbjct: 529 KATHVGNDSTLSQIVRL 545


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,585,454
Number of Sequences: 27780
Number of extensions: 335276
Number of successful extensions: 1289
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1289
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)