Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20024
(685 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ855484-1|ABH88171.1| 130|Apis mellifera chemosensory protein ... 26 0.29
AJ973401-1|CAJ01448.1| 130|Apis mellifera hypothetical protein ... 26 0.29
AF481963-1|AAN59784.1| 130|Apis mellifera antennal-specific pro... 26 0.29
AF069739-1|AAC63272.2| 690|Apis mellifera translation initiatio... 25 0.89
AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein. 23 2.7
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 23 3.6
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 23 3.6
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 23 3.6
AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced prot... 21 8.3
>DQ855484-1|ABH88171.1| 130|Apis mellifera chemosensory protein 3
protein.
Length = 130
Score = 26.2 bits (55), Expect = 0.29
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 159 AIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTWTS 263
A+A + +K+ EVIK+ +K L+EN K W S
Sbjct: 71 ALATDCKKCTDKQREVIKKVIKFLVEN-KPELWDS 104
>AJ973401-1|CAJ01448.1| 130|Apis mellifera hypothetical protein
protein.
Length = 130
Score = 26.2 bits (55), Expect = 0.29
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 159 AIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTWTS 263
A+A + +K+ EVIK+ +K L+EN K W S
Sbjct: 71 ALATDCKKCTDKQREVIKKVIKFLVEN-KPELWDS 104
>AF481963-1|AAN59784.1| 130|Apis mellifera antennal-specific
protein 3c precursor protein.
Length = 130
Score = 26.2 bits (55), Expect = 0.29
Identities = 14/35 (40%), Positives = 21/35 (60%)
Frame = +3
Query: 159 AIAKCSEYLKEKKGEVIKEAVKRLIENGKRNTWTS 263
A+A + +K+ EVIK+ +K L+EN K W S
Sbjct: 71 ALATDCKKCTDKQREVIKKVIKFLVEN-KPELWDS 104
>AF069739-1|AAC63272.2| 690|Apis mellifera translation initiation
factor 2 protein.
Length = 690
Score = 24.6 bits (51), Expect = 0.89
Identities = 13/48 (27%), Positives = 22/48 (45%)
Frame = +2
Query: 278 TKDGKEIVKSYFPIQFRVIFTEQTVKLINKRDHHALKLIDQQNHNKIA 421
T + K+I K P + ++I V ++ DH L+D + IA
Sbjct: 124 TMENKDITKRPLPNESQLIKRHPIVTIMGHVDHGKTTLLDALRNTSIA 171
>AY569713-1|AAS86666.1| 401|Apis mellifera feminizer protein.
Length = 401
Score = 23.0 bits (47), Expect = 2.7
Identities = 13/61 (21%), Positives = 23/61 (37%)
Frame = +1
Query: 388 VDRPTKPQQNCIR*LQRQNQQESLLEVYPRVGKQQSLLQDLSTEDKQYLKLDNTKGSSDD 567
+++ + C + N S + R S +DL ED+ + D + S D
Sbjct: 197 IEKSENETKTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDLRHEDRNSYRNDGERSCSRD 256
Query: 568 R 570
R
Sbjct: 257 R 257
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.6
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +2
Query: 245 EEHLDFAYQLWTKDGKEI 298
++H D + WT DG ++
Sbjct: 122 DQHCDMKFGSWTYDGNQV 139
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.6
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +2
Query: 245 EEHLDFAYQLWTKDGKEI 298
++H D + WT DG ++
Sbjct: 122 DQHCDMKFGSWTYDGNQV 139
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.6
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +2
Query: 245 EEHLDFAYQLWTKDGKEI 298
++H D + WT DG ++
Sbjct: 122 DQHCDMKFGSWTYDGNQV 139
>EF127802-1|ABL67939.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 3 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.6
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +2
Query: 245 EEHLDFAYQLWTKDGKEI 298
++H D + WT DG ++
Sbjct: 122 DQHCDMKFGSWTYDGNQV 139
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.6
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +2
Query: 245 EEHLDFAYQLWTKDGKEI 298
++H D + WT DG ++
Sbjct: 122 DQHCDMKFGSWTYDGNQV 139
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 22.6 bits (46), Expect = 3.6
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +2
Query: 245 EEHLDFAYQLWTKDGKEI 298
++H D + WT DG ++
Sbjct: 122 DQHCDMKFGSWTYDGNQV 139
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 3.6
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +2
Query: 245 EEHLDFAYQLWTKDGKEI 298
++H D + WT DG ++
Sbjct: 190 DQHCDMKFGSWTYDGNQV 207
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 22.6 bits (46), Expect = 3.6
Identities = 6/18 (33%), Positives = 11/18 (61%)
Frame = +2
Query: 245 EEHLDFAYQLWTKDGKEI 298
++H D + WT DG ++
Sbjct: 190 DQHCDMKFGSWTYDGNQV 207
>AB264313-1|BAF43600.1| 900|Apis mellifera ecdysone-induced protein
75 protein.
Length = 900
Score = 21.4 bits (43), Expect = 8.3
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 352 QAHKQKGPSRPQVDRPTKPQQNCIR*LQRQNQQE 453
Q H+Q+ V +PQQ + Q+Q QQ+
Sbjct: 422 QQHQQQQQQTQHVINAQQPQQQQQQQQQQQQQQQ 455
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,103
Number of Sequences: 438
Number of extensions: 4367
Number of successful extensions: 21
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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