Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20022
(669 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 33 0.028
SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces pomb... 27 2.4
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 2.4
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 27 3.2
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc... 26 4.3
SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces p... 26 4.3
SPBC691.05c ||SPBP22H7.01c|membrane transporter |Schizosaccharom... 26 4.3
SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces pombe... 25 7.5
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 7.5
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 7.5
SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces po... 25 9.9
SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyce... 25 9.9
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 25 9.9
SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr 3|||M... 25 9.9
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 33.5 bits (73), Expect = 0.028
Identities = 18/54 (33%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Frame = +2
Query: 53 MLAASAGVV--ELSADTSNQDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSII 208
++ A+AG+ LS + N+D+ K+ L G Y +A ++ QGKGS+I
Sbjct: 91 VMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144
>SPAC23H3.04 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 300
Score = 27.1 bits (57), Expect = 2.4
Identities = 13/26 (50%), Positives = 18/26 (69%)
Frame = -3
Query: 178 FQALTDSTVVVAGEDAVVQFLLEVLV 101
F +T V+V EDAVV+F+L +LV
Sbjct: 181 FLGVTVQYVMVLPEDAVVEFVLTILV 206
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +2
Query: 101 NQDLEEKLYNSILTGDYDSAVRQSLE 178
+ DLE+ + ++LTGD SAV+ LE
Sbjct: 551 DSDLEKNITEALLTGDVLSAVKACLE 576
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 26.6 bits (56), Expect = 3.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 164 RQSLEYESQGKGSIIQNVVNNLIIDKRRNTRST 262
++S++ ES K S +NV+ +D +RN T
Sbjct: 62 KESIKDESSAKSSETENVLEFATLDSKRNVNDT 94
>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
Thi1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/37 (35%), Positives = 19/37 (51%)
Frame = +3
Query: 66 ARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRAW 176
AR SLNY ++ + SRRN ++P S + W
Sbjct: 622 ARESLNYLKSFNKQLSRRNAPDINNPIADFQNSFQNW 658
>SPBC1683.04 |||glycosyl hydrolase family 3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 832
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/37 (35%), Positives = 17/37 (45%)
Frame = +2
Query: 401 PIPRMRELPTAMV*TSILNSSVGSSLPCGRTTECTSD 511
P R+ + P + TS NSS + PCG T D
Sbjct: 39 PSIRLSDGPNGIRGTSFFNSSPSACFPCGTALGATFD 75
>SPBC691.05c ||SPBP22H7.01c|membrane transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 668
Score = 26.2 bits (55), Expect = 4.3
Identities = 20/88 (22%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Frame = +2
Query: 74 VVELSADTSN-QDLEEKLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRN 250
++E++A + Q+ L + + +AVR S + V N+ +I+ N
Sbjct: 23 IIEVNASSKTCQETLSSLLRELQLSHFSTAVRPG----SDTSIFVFVKVQNDYLIELAHN 78
Query: 251 TRSTATSCGSATDRKLLESTSH*TLDSS 334
R+++ CG+ D + S +DSS
Sbjct: 79 DRTSSFLCGALDDLNHVNVNSVTDIDSS 106
>SPAC19E9.01c |nup40||nucleoporin Nup40|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 25.4 bits (53), Expect = 7.5
Identities = 17/49 (34%), Positives = 22/49 (44%)
Frame = +3
Query: 27 NFSLYLRCACSPPARASLNYPRTLLTKTSRRNCTTASSPATTTVLSVRA 173
N S + C SP A A + P+TL T ASS T+ + V A
Sbjct: 242 NDSFMVGCIYSP-AEAKEHVPKTLRNSNKDLEMTDASSSETSMSIPVHA 289
>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 565
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Frame = -3
Query: 661 DVVXRTWRAGRT-IAPWCCQRC 599
DV R RA R I WCCQ C
Sbjct: 143 DVSVRFSRAAREQIEGWCCQNC 164
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.4 bits (53), Expect = 7.5
Identities = 19/63 (30%), Positives = 30/63 (47%)
Frame = -1
Query: 408 GIGCGTELQSEVVVSVNDLDIVSGHDESKV*WEVLSNNFLSVADPQLVAVLLVFRLLSMI 229
G CG + VV + LD V G DE+ + LS + DP A L++ +L+S +
Sbjct: 1113 GHSCGVIKEYSTVVVMGSLDGVEGSDETVSGGQRLSLDRPPTNDP---ASLMIHQLISCM 1169
Query: 228 RLL 220
+
Sbjct: 1170 NAI 1172
>SPBP23A10.11c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 507
Score = 25.0 bits (52), Expect = 9.9
Identities = 7/20 (35%), Positives = 15/20 (75%)
Frame = +3
Query: 513 HNTKYNQYLKMSTTTCNCNS 572
+++ YN+ M T++C+C+S
Sbjct: 47 YSSTYNEITNMDTSSCSCSS 66
>SPBC28E12.02 ||SPBC9B6.13|RNA-binding protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 663
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = +3
Query: 468 EVHY-LVGEQQSVLQIHNTKYNQYLKMSTTTCNC 566
E+H L+G + +Q YN Y++ STT +C
Sbjct: 588 EIHKKLIGFRGEQIQRVTKLYNSYIEFSTTPFDC 621
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 25.0 bits (52), Expect = 9.9
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 429 RRWCRQAY*TRQLEVHYLVGEQQSVLQIHNTK 524
RR+ Y T Q E +Y+ ++LQIH T+
Sbjct: 594 RRYPVDIYYTPQPEANYIQAAITTILQIHTTQ 625
>SPCC550.09 |||peroxin Pex32 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 535
Score = 25.0 bits (52), Expect = 9.9
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 309 VLSNNFLSVADPQLVAVLLVFRLLSMIRLL 220
VLS+ FL+ P L AVL R +S LL
Sbjct: 282 VLSSVFLAWHSPPLQAVLFCIRRISFFNLL 311
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,613,371
Number of Sequences: 5004
Number of extensions: 51700
Number of successful extensions: 171
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 305854096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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