Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20022
         (669 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0187 + 12805788-12807007,12807059-12807186,12807811-128078...    29   3.3  
06_01_0728 - 5356400-5356676,5356888-5357090,5357181-5357474,535...    29   3.3  
02_02_0468 + 10633992-10634064,10635998-10636130,10636244-106363...    28   7.7  

>06_02_0187 +
           12805788-12807007,12807059-12807186,12807811-12807859,
           12808508-12808853
          Length = 580

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
 Frame = -1

Query: 240 LSMIRLLTTFWMMEPLPWL-----SYSKL*RTALS*SPVRMLLYSFSSRSWLEVSADSST 76
           L+++ L+   W + P   L     + S      L  SP   +  SF S +    S D++T
Sbjct: 36  LALLTLIMALWQLHPYQPLVLLPAALSSSPCPLLPRSPTSGIAVSFLSTAAATNSTDTAT 95

Query: 75  TPALAASMHIANTTR 31
            P   A+  +A TTR
Sbjct: 96  VPTTTAAARVAATTR 110


>06_01_0728 -
           5356400-5356676,5356888-5357090,5357181-5357474,
           5357940-5358063,5358157-5359496
          Length = 745

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/47 (29%), Positives = 26/47 (55%)
 Frame = +3

Query: 378 RSEARFHNQSLE*ENCLRRWCRQAY*TRQLEVHYLVGEQQSVLQIHN 518
           R E  F  + ++ ++ L+ W  +AY  R+   H L   + +V+Q+HN
Sbjct: 469 RFEGAFETRKIK-KSALKNWVVKAYLDRKSLAHSLNDTKTAVMQLHN 514


>02_02_0468 +
           10633992-10634064,10635998-10636130,10636244-10636315,
           10637028-10637171,10637271-10637342,10637451-10637516,
           10637603-10637673,10637796-10637936,10638347-10638688,
           10638989-10639383,10639481-10639795
          Length = 607

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 16/61 (26%), Positives = 27/61 (44%)
 Frame = +2

Query: 119 KLYNSILTGDYDSAVRQSLEYESQGKGSIIQNVVNNLIIDKRRNTRSTATSCGSATDRKL 298
           K+Y  +L      AV++  +YES G  +     V  + +   RN       C + T+R L
Sbjct: 297 KVYKGVLPDGTKIAVKRLTDYESPGGEAAFLREVELISVAVHRNLLKLIGFCTTQTERLL 356

Query: 299 L 301
           +
Sbjct: 357 V 357


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,888,946
Number of Sequences: 37544
Number of extensions: 364554
Number of successful extensions: 1102
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1102
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1691314196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)