Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20021
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces pomb...    27   2.0  
SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   2.7  
SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|ch...    26   4.7  
SPBC685.09 |orc2|orp2|origin recognition complex subunit Orc2|Sc...    26   4.7  
SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces pomb...    26   4.7  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    26   6.2  
SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid protease|Schi...    26   6.2  
SPCC737.04 |||S. pombe specific UPF0300 family protein 6|Schizos...    25   8.2  

>SPBC11G11.07 ||SPBC18H10.01|karyopherin|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 955

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = -1

Query: 218 RYKRWTGSRGTFLQIRLNY 162
           RY  WT     FL+++LNY
Sbjct: 497 RYTEWTAQHSEFLELQLNY 515


>SPBC21B10.06c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 470

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -3

Query: 678 FCSFNAVYLWPC 643
           F SF A+YLWPC
Sbjct: 35  FISFLAIYLWPC 46


>SPBC646.15c |||Pex16 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 376

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 642 SKYPPCVSFLINDHIIWHVVIELSLLAPEL 553
           SKY P   FL+  HI+W    +L L  P L
Sbjct: 119 SKYNPSRQFLLRVHIMWTTGGDLPLSNPVL 148


>SPBC685.09 |orc2|orp2|origin recognition complex subunit
           Orc2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 535

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -3

Query: 264 KLPCILIFIIKIFSPALQ 211
           KLPC  IF++K + P LQ
Sbjct: 279 KLPCFPIFVVKGYFPQLQ 296


>SPAC144.17c |||6-phosphofructo-2-kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 432

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 20/81 (24%), Positives = 35/81 (43%)
 Frame = +2

Query: 104 KTPEANSSRTKHDLLQDSIYS*AEFVKMCLVNLSTFCSAGLNIFIINISIQGSFRISYIV 283
           +T E  SS  K    ++ ++S  + ++ CL +L  F         I  +  G+ R   I+
Sbjct: 95  RTREMTSSPVKSAASENHVFSRNDTIERCLADLEIFLLKEKGQVAIYDATNGTRRTRRIL 154

Query: 284 YNCALCPNCNVT*TFVCTLIN 346
           Y+     NC     F+ +L N
Sbjct: 155 YD--RFKNCGFKILFIESLCN 173


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 15/48 (31%), Positives = 22/48 (45%)
 Frame = +2

Query: 212  CSAGLNIFIINISIQGSFRISYIVYNCALCPNCNVT*TFVCTLINVFV 355
            CSA L+     I   G  +I  I ++  +  NC +   FV  L N F+
Sbjct: 1103 CSADLHTIAKEIQGPGGPKIDDITWHYRIYENCFLGSEFVSWLANTFI 1150


>SPBC13E7.11 ||SPBC30D10.19c|mitochondrial rhomboid
           protease|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 298

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 95  TFAYCGYLDKRKQSYANMSY 36
           TF    YLDKR+++Y   SY
Sbjct: 48  TFYTANYLDKRRKNYPKSSY 67


>SPCC737.04 |||S. pombe specific UPF0300 family protein
           6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 421

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = +2

Query: 341 INVFVTSLSWLHIVFSTISVENLNSE 418
           +N+ VTS  WL  +   +S+ENL  +
Sbjct: 59  VNINVTSQDWLSKLDRNLSIENLTGK 84


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,247,866
Number of Sequences: 5004
Number of extensions: 71462
Number of successful extensions: 147
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)