Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20021
         (716 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subu...    28   0.25 
AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.    24   5.4  
AY805323-1|AAV66543.1|  459|Anopheles gambiae beta subunit-GABA-...    23   7.2  

>AJ292755-1|CAC00630.1|  837|Anopheles gambiae integrin beta subunit
           protein.
          Length = 837

 Score = 28.3 bits (60), Expect = 0.25
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
 Frame = -2

Query: 385 EHDMQP--RQRCDENIN*STYKC-LC-----YITIRAQCAIVDNIRDP 266
           EH   P  R+R DE  N  TYKC +C     Y   R +C+ ++++ +P
Sbjct: 498 EHPSDPEYRERADECSNAGTYKCGICECDGTYHGQRCECSAMESLLEP 545


>AJ535205-1|CAD59405.1| 1201|Anopheles gambiae SMC3 protein protein.
          Length = 1201

 Score = 23.8 bits (49), Expect = 5.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -1

Query: 470  NGHSIKYNFIYKVGIEIFLNSNFQPKSLRTRYA 372
            N H  KYN + K  ++ FL+ + Q + L  R A
Sbjct: 972  NQHLKKYNHVNKKALDQFLSFSEQKEKLYKRKA 1004


>AY805323-1|AAV66543.1|  459|Anopheles gambiae beta
           subunit-GABA-A-gated chloride channelprotein.
          Length = 459

 Score = 23.4 bits (48), Expect = 7.2
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 191 GTFLQIRLNYKLNLVTDHVWFANYLPRVFYIM 96
           G + ++ L++KL     +  F  YLP +  +M
Sbjct: 207 GIYQRLSLSFKLQRNIGYFVFQTYLPSILIVM 238


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 840,404
Number of Sequences: 2352
Number of extensions: 18513
Number of successful extensions: 129
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 72765525
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)