Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20021
         (716 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    23   2.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   3.8  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    22   5.0  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    22   5.0  

>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 191 GTFLQIRLNYKLNLVTDHVWFANYLPRVFYIM 96
           G + ++ L++KL     +  F  YLP +  +M
Sbjct: 226 GIYQRLSLSFKLQRNIGYFVFQTYLPSILIVM 257


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 3.8
 Identities = 10/41 (24%), Positives = 23/41 (56%)
 Frame = -2

Query: 583  YRIITLSTGAGLINKMV*FK*S*KTLIKGLFGHSSLNKTVI 461
            Y++I + +G G+  K      S +T++ GL  +++ +  V+
Sbjct: 1117 YKVIVIPSGGGIYTKDTKITSSSETILHGLKKYTNYSMQVL 1157


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 412 FRNISMPTLYIKLY 453
           F NI MP +YI+++
Sbjct: 130 FHNIIMPNVYIRIF 143


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +1

Query: 412 FRNISMPTLYIKLY 453
           F NI MP +YI+++
Sbjct: 130 FHNIIMPNVYIRIF 143


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 224,417
Number of Sequences: 438
Number of extensions: 5405
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22170330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)