Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20020
         (688 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces po...    88   1e-18
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    27   2.5  
SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces pomb...    27   3.4  
SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr 3...    26   5.9  
SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2 |Schizo...    25   7.8  
SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein k...    25   7.8  
SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|c...    25   7.8  
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c...    25   7.8  

>SPBC17A3.09c |||lipoate-protein ligase A |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 363

 Score = 88.2 bits (209), Expect = 1e-18
 Identities = 40/80 (50%), Positives = 57/80 (71%)
 Frame = +1

Query: 16  VFMSQSTDIYTNLALEDWLYKNMDFTNHHVMMVWRNEPCVVIGRHQNPWLEANVPLLSEK 195
           V + +S + Y NLALE++LY+N   T  H ++++ N P V+IGR+QNPW+EANV L  + 
Sbjct: 27  VVVCKSVNPYFNLALENYLYENS--TAKHCLLLYTNSPSVIIGRNQNPWVEANVKLCRDN 84

Query: 196 EIALARRNSGGGTVYHDRGN 255
            + + RR SGGGTV+HD GN
Sbjct: 85  FVNIIRRKSGGGTVFHDFGN 104



 Score = 50.8 bits (116), Expect = 2e-07
 Identities = 26/86 (30%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
 Frame = +3

Query: 255 LNITFFAPREXYDRNYNLKLIKRALFRSFGIKSTINERQDLIV-RDKYKVSGTAAKLGRL 431
           LN +    RE +    N  ++ +AL R+ G+ + +N+R D+++ + + K+SG+A K+ R 
Sbjct: 105 LNYSVLMNREEFSHTENASIMIQAL-RNLGVHARLNQRHDIVLAQSQRKISGSAYKISRN 163

Query: 432 TGYHHCTLLVNANKADLSKALAKRET 509
             YHH T+L+N++   + + L    T
Sbjct: 164 RCYHHGTMLLNSDLEGVREYLRSPST 189


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 10/22 (45%), Positives = 18/22 (81%)
 Frame = +1

Query: 1   EITKSVFMSQSTDIYTNLALED 66
           EI +S+F+SQ+  ++ N++LED
Sbjct: 728 EIPESLFLSQNVFVFLNVSLED 749


>SPBC1703.14c |top1||DNA topoisomerase I|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 814

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
 Frame = -1

Query: 271 KNVIFSFLGHDK-QYHHHCYDVPKLFLFQKVVEHSPPAKDFDV 146
           + V+F FLG D  +Y++     P++F   K+ +  PP K+ D+
Sbjct: 496 RTVVFDFLGKDSIRYYNEVEVDPQVFKNLKIFKR-PPKKEGDL 537


>SPCC63.13 |||DNAJ domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 208

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 15/35 (42%), Positives = 20/35 (57%)
 Frame = +1

Query: 568 YGRESANSARLRIPSYSSSAPGRRRPEPDSQKQRG 672
           Y RESA+S+     S+ S    R  P+P SQ Q+G
Sbjct: 67  YDRESASSSAKPRQSFFS----RTNPQPQSQSQQG 97


>SPCC1020.01c |pma2|SPCC1393.01|P-type proton ATPase Pma2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1010

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +2

Query: 512 ATASTRSEVANLKDLDNRITVENLQTALGYEYLRTPAL 625
           A  +T ++ ANL+  +  IT E   T+ G E   +P+L
Sbjct: 67  AAPNTHAQQANLQSGNTSITHETQSTSRGQEATTSPSL 104


>SPAC16C9.07 |ppk5|SPAC2G11.01, mug189|serine/threonine protein
           kinase Ppk5 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 836

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 283 RXMTEITI*S*LREHCSEVLALSQLLMNVRTLSSETNTRYLE 408
           + + E+ I   LRE C  + A S   ++ R + S T   YLE
Sbjct: 426 KVLREVNILKRLRESCVAITAKSYDTLDERKIRSLTTFEYLE 467


>SPAC2G11.09 |||DUF221 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 796

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = -2

Query: 210 CQSYFFFRK*WNIRLQPRILMSSNNHTWLISPHHHNMM 97
           C  + FFRK W +   PR  +   N   L S ++  +M
Sbjct: 39  CVFFCFFRKRWKVLYAPRTTIEGLNLPTLSSSYYKWLM 76


>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 541 QPEGPGQQNYGRESANSARLRIPSYSSSAPGRR 639
           +P GPG Q    E++ S  + +P Y +   GRR
Sbjct: 353 EPSGPGLQKRASETSMSTNVSLPYYQN---GRR 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,748,693
Number of Sequences: 5004
Number of extensions: 54819
Number of successful extensions: 164
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 317927284
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)