Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20020
         (688 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z92780-3|CAB07178.2|  289|Caenorhabditis elegans Hypothetical pr...    94   1e-19
AF098996-2|AAC68711.3|  431|Caenorhabditis elegans Hypothetical ...    30   1.8  
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p...    28   5.4  
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ...    28   5.4  
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha...    28   5.4  

>Z92780-3|CAB07178.2|  289|Caenorhabditis elegans Hypothetical
           protein C45G3.3 protein.
          Length = 289

 Score = 93.9 bits (223), Expect = 1e-19
 Identities = 39/82 (47%), Positives = 57/82 (69%), Gaps = 1/82 (1%)
 Frame = +1

Query: 13  SVFMSQSTDIYTNLALEDWLYKNMDFT-NHHVMMVWRNEPCVVIGRHQNPWLEANVPLLS 189
           +V  S S+ I+ NLA E+ +++  +   N  ++++W N P VVIGRHQNPW+E N+P  +
Sbjct: 11  TVLKSTSSCIFENLAYEEHIFRTHNVAQNGEILLMWSNRPAVVIGRHQNPWIEVNIPYAN 70

Query: 190 EKEIALARRNSGGGTVYHDRGN 255
           +  I + RR+SGGGTVYHD GN
Sbjct: 71  KNNIQIVRRHSGGGTVYHDLGN 92



 Score = 58.8 bits (136), Expect = 3e-09
 Identities = 34/81 (41%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
 Frame = +3

Query: 255 LNITFFAPREXYDRNYNLKLIKRALFRSFGIKSTINERQDLIVRD-KYKVSGTAAKLGRL 431
           LNI+       + R  NLK I  AL + F +K   N+R D+ +   + K SGTAA++ R 
Sbjct: 93  LNISLLTTHAQHCRPKNLKFISDALNQQFSVKIVPNKRDDMELHPGERKCSGTAARIARG 152

Query: 432 TGYHHCTLLVNANKADLSKAL 494
             YHH TLLV A+   LSK+L
Sbjct: 153 QAYHHLTLLVGADLQVLSKSL 173


>AF098996-2|AAC68711.3|  431|Caenorhabditis elegans Hypothetical
           protein T11F1.6 protein.
          Length = 431

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 16/57 (28%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +1

Query: 22  MSQSTDIYTNLALEDWLYKNMDFTNHHVMMVWRNEPCVVIGRHQNPWL-EANVPLLS 189
           +S  +DIY +L++++ + K+++F +  + +    E   VI    NP+L +A +P++S
Sbjct: 373 LSYVSDIYGSLSIKNTILKDLNFLSRLMYIALLEENRYVIQIISNPFLYKARLPMIS 429


>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
           protein T22A3.8 protein.
          Length = 3102

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 342 GIKSTINERQDLIVRDKYKVSGTAAKLGRLTGYHHCTLLVNANKADLSKALAK--RETKR 515
           GIK   + R + + R+K  V   A  +  L+G+++       +KAD+ +ALA   R T R
Sbjct: 633 GIKIEYHSRIEFLPREKMTV---AIPMSELSGWYNAEARSPVDKADMMRALANVDRFTVR 689

Query: 516 RPQRDPK 536
                P+
Sbjct: 690 ATYHQPQ 696


>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
           protein T22A3.8 protein.
          Length = 3102

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 342 GIKSTINERQDLIVRDKYKVSGTAAKLGRLTGYHHCTLLVNANKADLSKALAK--RETKR 515
           GIK   + R + + R+K  V   A  +  L+G+++       +KAD+ +ALA   R T R
Sbjct: 633 GIKIEYHSRIEFLPREKMTV---AIPMSELSGWYNAEARSPVDKADMMRALANVDRFTVR 689

Query: 516 RPQRDPK 536
                P+
Sbjct: 690 ATYHQPQ 696


>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
           chain protein.
          Length = 3102

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 2/67 (2%)
 Frame = +3

Query: 342 GIKSTINERQDLIVRDKYKVSGTAAKLGRLTGYHHCTLLVNANKADLSKALAK--RETKR 515
           GIK   + R + + R+K  V   A  +  L+G+++       +KAD+ +ALA   R T R
Sbjct: 633 GIKIEYHSRIEFLPREKMTV---AIPMSELSGWYNAEARSPVDKADMMRALANVDRFTVR 689

Query: 516 RPQRDPK 536
                P+
Sbjct: 690 ATYHQPQ 696


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,510,774
Number of Sequences: 27780
Number of extensions: 324662
Number of successful extensions: 819
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1571291122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)