Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20020
         (688 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          25   0.89 
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      25   0.89 
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                24   1.6  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   4.8  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 82  CSYTTNPPEPSSYKYQSIET 23
           C +T N  EPS   Y+ IET
Sbjct: 564 CFFTMNDLEPSEIFYEKIET 583


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 24.6 bits (51), Expect = 0.89
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = -1

Query: 82  CSYTTNPPEPSSYKYQSIET 23
           C +T N  EPS   Y+ IET
Sbjct: 564 CFFTMNDLEPSEIFYEKIET 583


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
 Frame = +1

Query: 520 LNAIRSGQPE--GPGQQN-YGRESANSARLRIPSYSSS 624
           L+ I S  P+  G G QN YGR     A++  PSY+++
Sbjct: 191 LHGILSQHPQQHGLGVQNGYGRHLPGHAQMGRPSYTTA 228


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +1

Query: 469 TRQISAKLLLNVRQSDGLNAI 531
           TRQ   +L+ N+RQS  L+ +
Sbjct: 139 TRQYLLQLIRNLRQSSALDGV 159


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,940
Number of Sequences: 438
Number of extensions: 3856
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20952180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)