Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20019
         (700 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36662| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_9811| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.3  
SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36)                28   8.4  

>SB_36662| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 440

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/37 (40%), Positives = 20/37 (54%)
 Frame = +2

Query: 461 NVNGLCEISVDRFCIISFSLKIKFSRIWIFIYLMILF 571
           N+ G+  I V   CII+F L    S    F+YLM+ F
Sbjct: 130 NILGITFIFVLLSCIIAFELMTSLSAYQQFLYLMVTF 166


>SB_9811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 333

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/51 (21%), Positives = 28/51 (54%)
 Frame = +2

Query: 422 YFIWCFYLNIICFNVNGLCEISVDRFCIISFSLKIKFSRIWIFIYLMILFI 574
           +F+W      IC ++  L  +++ R  +I    K +    ++FI++++++I
Sbjct: 103 WFVWPTMTVTICLSIFTLTSMAIHRRKVILNPFKPEIKHRYVFIWIVVIWI 153


>SB_6589| Best HMM Match : zf-C2H2 (HMM E-Value=1.2e-36)
          Length = 651

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 13/53 (24%), Positives = 26/53 (49%)
 Frame = -3

Query: 176 ATRKTNEHMKNFKISRTKKFMRPITKVSSSPQCIYVKLLTGQDIYERWIDTSD 18
           AT K+N+ ++  +   T +    + + +  PQC     + G+D+  +  DT D
Sbjct: 442 ATSKSNQGVRKAEEKGTHQIDVQVMESTDIPQCHATNAIAGEDVKAKKEDTED 494


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,393,717
Number of Sequences: 59808
Number of extensions: 322872
Number of successful extensions: 550
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)