Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20018
(606 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 174 1e-44
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 97 1e-21
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 95 7e-21
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 92 5e-20
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 59 4e-10
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 58 8e-10
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 48 8e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 33 0.043
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 30 0.30
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 30 0.30
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 2.8
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 3.7
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 4.9
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom... 25 8.6
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 174 bits (423), Expect = 1e-44
Identities = 78/91 (85%), Positives = 82/91 (90%)
Frame = +1
Query: 238 GTEGLFVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 417
G + +VGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107
Query: 418 APLNPKANREXMTQIMFXTFNTPAMYVAIQA 510
APLNPK+NRE MTQI+F TFN PA YVAIQA
Sbjct: 108 APLNPKSNREKMTQIIFETFNAPAFYVAIQA 138
Score = 106 bits (254), Expect = 3e-24
Identities = 46/51 (90%), Positives = 50/51 (98%)
Frame = +2
Query: 101 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 253
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDS
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDS 52
Score = 66.5 bits (155), Expect = 3e-12
Identities = 30/33 (90%), Positives = 32/33 (96%)
Frame = +3
Query: 507 SVLSLYASGRXTGIVLDSGDGVSHTVPIYEGYA 605
+VLSLYASGR TGIVLDSGDGV+HTVPIYEGYA
Sbjct: 138 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYA 170
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 97.5 bits (232), Expect = 1e-21
Identities = 40/96 (41%), Positives = 66/96 (68%)
Frame = +1
Query: 223 RDGRYGTEGLFVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 402
+ G + + VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 403 VLLTEAPLNPKANREXMTQIMFXTFNTPAMYVAIQA 510
+LLTE P+NP ANRE M + MF + +YVAIQA
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQA 138
Score = 49.2 bits (112), Expect = 5e-07
Identities = 20/30 (66%), Positives = 26/30 (86%)
Frame = +3
Query: 507 SVLSLYASGRXTGIVLDSGDGVSHTVPIYE 596
+VLSLYA G +G+V+DSGDGV+H VP+YE
Sbjct: 138 AVLSLYAQGLSSGVVVDSGDGVTHIVPVYE 167
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +2
Query: 107 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 211
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 95.1 bits (226), Expect = 7e-21
Identities = 41/87 (47%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Frame = +1
Query: 253 FVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLN 429
F+G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE PLN
Sbjct: 75 FIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLN 134
Query: 430 PKANREXMTQIMFXTFNTPAMYVAIQA 510
P NRE +IMF +FN +Y+A+QA
Sbjct: 135 PPENRENTAEIMFESFNCAGLYIAVQA 161
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +2
Query: 119 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 202
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
Score = 37.9 bits (84), Expect = 0.001
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +3
Query: 540 TGIVLDSGDGVSHTVPIYEGY 602
TG V+DSGDGV+H +P+ EGY
Sbjct: 180 TGTVVDSGDGVTHIIPVAEGY 200
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 92.3 bits (219), Expect = 5e-20
Identities = 40/87 (45%), Positives = 59/87 (67%), Gaps = 1/87 (1%)
Frame = +1
Query: 250 LFVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPL 426
+FVG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL
Sbjct: 56 MFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPL 115
Query: 427 NPKANREXMTQIMFXTFNTPAMYVAIQ 507
N+E + + + T N PA+ ++Q
Sbjct: 116 ANIRNKEKIAEYFYETLNVPALSFSLQ 142
Score = 58.8 bits (136), Expect = 6e-10
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = +2
Query: 119 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 250
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKD 55
Score = 52.0 bits (119), Expect = 7e-08
Identities = 21/32 (65%), Positives = 29/32 (90%)
Frame = +3
Query: 510 VLSLYASGRXTGIVLDSGDGVSHTVPIYEGYA 605
VL+LYAS R TGIVL+ GDG++H+VPIY+G++
Sbjct: 144 VLALYASARTTGIVLECGDGLTHSVPIYDGFS 175
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 59.3 bits (137), Expect = 4e-10
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Frame = +1
Query: 223 RDGRYGTEGLFVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 399
RD + VG++ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 400 PVLLTEAPLNPKANREXMTQIMFXTFNTPAMYVAI 504
P+ +TE NP R MT+++F +N P++ I
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSVAYGI 151
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 119 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 214
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 26.2 bits (55), Expect = 3.7
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +3
Query: 540 TGIVLDSGDGVSHTVPIYEG 599
+GIVL+ G+ SH +P+ G
Sbjct: 166 SGIVLNLGNAASHVIPVLNG 185
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 58.4 bits (135), Expect = 8e-10
Identities = 27/73 (36%), Positives = 39/73 (53%)
Frame = +1
Query: 289 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREXMTQIMF 468
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 469 XTFNTPAMYVAIQ 507
+ PA Y+A Q
Sbjct: 123 ESLRCPATYLAKQ 135
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 104 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 205
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 48.4 bits (110), Expect = 8e-07
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Frame = +1
Query: 253 FVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 426
+V DE Q I + +K +GI+ +W+ W +L+V P E+ +++TE
Sbjct: 52 YVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSW 111
Query: 427 NPKANREXMTQIMFXTFNTPAMYVAIQA 510
NP++ R+ + + F + PA Y+ QA
Sbjct: 112 NPQSVRQQIMEAAFEQLHVPAFYLTKQA 139
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 104 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 205
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 32.7 bits (71), Expect = 0.043
Identities = 20/72 (27%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Frame = +1
Query: 304 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREXMTQIMFX 471
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ F
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 472 TFNTPAMYVAIQ 507
P +A +
Sbjct: 172 ECQVPGFTIAYE 183
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 29.9 bits (64), Expect = 0.30
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 5/53 (9%)
Frame = +1
Query: 364 FYNELRVAPEEHPVLLTE--APLNPKANREXMTQIMFXTFNTPAM---YVAIQ 507
+Y L E+HP+LLT+ A L P+ + + +I + NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 29.9 bits (64), Expect = 0.30
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -1
Query: 336 IPVSDDSVFDGVFEGQDTSFALCLISYKESFCPIPTITP*WRGLPTIEGNTARGASSPAK 157
+P + +V +TSFAL S S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 156 PALHIP 139
P L+ P
Sbjct: 123 PQLNSP 128
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 2.8
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -1
Query: 234 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 100
PT+ P P N S P PL+TTN TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 3.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 240 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 148
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 4.9
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -2
Query: 257 TKSPSVPYRPSRPDGGAFPRSRGTR 183
+K+PS PY SRP A S TR
Sbjct: 311 SKAPSYPYSSSRPSASASLASSPTR 335
>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.0 bits (52), Expect = 8.6
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -3
Query: 562 PESSTIPVXRPDAYSESTLGWRRTSR 485
PE + + R D+Y GW R +R
Sbjct: 611 PEGVRVNIMRDDSYYRQNRGWYRNNR 636
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,480,665
Number of Sequences: 5004
Number of extensions: 51339
Number of successful extensions: 163
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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