Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbS20018
(606 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 183 9e-47
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 183 9e-47
SB_56| Best HMM Match : Actin (HMM E-Value=0) 183 9e-47
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 183 9e-47
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 183 9e-47
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 108 4e-24
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 96 2e-20
SB_54| Best HMM Match : Actin (HMM E-Value=0) 80 1e-15
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 64 1e-10
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 62 4e-10
SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12) 60 2e-09
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 56 2e-08
SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6) 56 2e-08
SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022) 51 6e-07
SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.) 42 4e-04
SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.003
SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10) 39 0.004
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 37 0.011
SB_18097| Best HMM Match : NadA (HMM E-Value=2.2) 33 0.14
SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_21074| Best HMM Match : NadA (HMM E-Value=2) 33 0.18
SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8) 33 0.18
SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0) 33 0.18
SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.18
SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28) 33 0.24
SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.55
SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8) 31 0.55
SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28) 31 0.72
SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 31 0.72
SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2) 31 0.72
SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27) 31 0.72
SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39) 31 0.72
SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42) 31 0.72
SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_36120| Best HMM Match : zf-MIZ (HMM E-Value=3.9) 29 2.2
SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0) 29 2.2
SB_15607| Best HMM Match : zf-MIZ (HMM E-Value=3.9) 29 2.2
SB_59500| Best HMM Match : RVT_1 (HMM E-Value=0.015) 29 2.2
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.2
SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0) 29 2.2
SB_42341| Best HMM Match : DUF701 (HMM E-Value=3) 29 2.9
SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0) 29 3.9
SB_46483| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_35376| Best HMM Match : RVT_1 (HMM E-Value=0) 28 5.1
SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7) 28 5.1
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 28 5.1
SB_21844| Best HMM Match : RVT_1 (HMM E-Value=0) 28 5.1
SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_19106| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_12274| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_11572| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.1
SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_40186| Best HMM Match : Extensin_2 (HMM E-Value=0.0036) 28 6.7
SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.9
SB_28762| Best HMM Match : RVT_1 (HMM E-Value=3.9e-23) 27 8.9
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 183 bits (446), Expect = 9e-47
Identities = 83/91 (91%), Positives = 86/91 (94%)
Frame = +1
Query: 238 GTEGLFVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 417
G + +VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 418 APLNPKANREXMTQIMFXTFNTPAMYVAIQA 510
APLNPKANRE MTQIMF TFN+PAMYVAIQA
Sbjct: 109 APLNPKANREKMTQIMFETFNSPAMYVAIQA 139
Score = 109 bits (263), Expect = 1e-24
Identities = 50/53 (94%), Positives = 52/53 (98%)
Frame = +2
Query: 95 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 253
M D+E+AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS
Sbjct: 1 MEDDEIAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 53
Score = 65.7 bits (153), Expect = 3e-11
Identities = 29/33 (87%), Positives = 32/33 (96%)
Frame = +3
Query: 507 SVLSLYASGRXTGIVLDSGDGVSHTVPIYEGYA 605
+VLSLYASGR TGIV+DSGDGV+HTVPIYEGYA
Sbjct: 139 AVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYA 171
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 183 bits (446), Expect = 9e-47
Identities = 83/91 (91%), Positives = 86/91 (94%)
Frame = +1
Query: 238 GTEGLFVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 417
G + +VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 107
Query: 418 APLNPKANREXMTQIMFXTFNTPAMYVAIQA 510
APLNPKANRE MTQIMF TFN+PAMYVAIQA
Sbjct: 108 APLNPKANREKMTQIMFETFNSPAMYVAIQA 138
Score = 107 bits (256), Expect = 9e-24
Identities = 48/51 (94%), Positives = 51/51 (100%)
Frame = +2
Query: 101 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 253
+++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS
Sbjct: 2 EDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 52
Score = 65.7 bits (153), Expect = 3e-11
Identities = 29/33 (87%), Positives = 32/33 (96%)
Frame = +3
Query: 507 SVLSLYASGRXTGIVLDSGDGVSHTVPIYEGYA 605
+VLSLYASGR TGIV+DSGDGV+HTVPIYEGYA
Sbjct: 138 AVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYA 170
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 183 bits (446), Expect = 9e-47
Identities = 83/91 (91%), Positives = 86/91 (94%)
Frame = +1
Query: 238 GTEGLFVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 417
G + +VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 107
Query: 418 APLNPKANREXMTQIMFXTFNTPAMYVAIQA 510
APLNPKANRE MTQIMF TFN+PAMYVAIQA
Sbjct: 108 APLNPKANREKMTQIMFETFNSPAMYVAIQA 138
Score = 108 bits (259), Expect = 4e-24
Identities = 49/51 (96%), Positives = 51/51 (100%)
Frame = +2
Query: 101 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 253
++EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS
Sbjct: 2 EDEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 52
Score = 65.7 bits (153), Expect = 3e-11
Identities = 29/33 (87%), Positives = 32/33 (96%)
Frame = +3
Query: 507 SVLSLYASGRXTGIVLDSGDGVSHTVPIYEGYA 605
+VLSLYASGR TGIV+DSGDGV+HTVPIYEGYA
Sbjct: 138 AVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYA 170
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 183 bits (446), Expect = 9e-47
Identities = 83/91 (91%), Positives = 86/91 (94%)
Frame = +1
Query: 238 GTEGLFVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 417
G + +VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 418 APLNPKANREXMTQIMFXTFNTPAMYVAIQA 510
APLNPKANRE MTQIMF TFN+PAMYVAIQA
Sbjct: 109 APLNPKANREKMTQIMFETFNSPAMYVAIQA 139
Score = 114 bits (274), Expect = 6e-26
Identities = 51/53 (96%), Positives = 53/53 (100%)
Frame = +2
Query: 95 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 253
MCD++VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS
Sbjct: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 53
Score = 65.7 bits (153), Expect = 3e-11
Identities = 29/33 (87%), Positives = 32/33 (96%)
Frame = +3
Query: 507 SVLSLYASGRXTGIVLDSGDGVSHTVPIYEGYA 605
+VLSLYASGR TGIV+DSGDGV+HTVPIYEGYA
Sbjct: 139 AVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYA 171
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 183 bits (446), Expect = 9e-47
Identities = 83/91 (91%), Positives = 86/91 (94%)
Frame = +1
Query: 238 GTEGLFVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 417
G + +VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE
Sbjct: 49 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 108
Query: 418 APLNPKANREXMTQIMFXTFNTPAMYVAIQA 510
APLNPKANRE MTQIMF TFN+PAMYVAIQA
Sbjct: 109 APLNPKANREKMTQIMFETFNSPAMYVAIQA 139
Score = 109 bits (263), Expect = 1e-24
Identities = 48/53 (90%), Positives = 52/53 (98%)
Frame = +2
Query: 95 MCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 253
M D+++AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS
Sbjct: 1 MADDDIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 53
Score = 60.5 bits (140), Expect = 1e-09
Identities = 29/35 (82%), Positives = 32/35 (91%), Gaps = 2/35 (5%)
Frame = +3
Query: 507 SVLSLYASGRXTGIVLDSGDGVSHTVPIYE--GYA 605
+VLSLYASGR TGIV+DSGDGVSHTVPIYE GY+
Sbjct: 139 AVLSLYASGRTTGIVMDSGDGVSHTVPIYEERGYS 173
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 108 bits (259), Expect = 4e-24
Identities = 48/51 (94%), Positives = 51/51 (100%)
Frame = +2
Query: 101 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 253
D++VAALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS
Sbjct: 2 DDDVAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 52
Score = 78.6 bits (185), Expect = 4e-15
Identities = 35/43 (81%), Positives = 37/43 (86%)
Frame = +1
Query: 238 GTEGLFVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF 366
G + +VGDEAQSKRGILTLKYPIEHGIVTNWDDMEKI TF
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIMFETF 90
Score = 65.7 bits (153), Expect = 3e-11
Identities = 29/33 (87%), Positives = 32/33 (96%)
Frame = +3
Query: 507 SVLSLYASGRXTGIVLDSGDGVSHTVPIYEGYA 605
+VLSLYASGR TGIV+DSGDGV+HTVPIYEGYA
Sbjct: 101 AVLSLYASGRTTGIVMDSGDGVTHTVPIYEGYA 133
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/24 (70%), Positives = 20/24 (83%)
Frame = +1
Query: 439 NREXMTQIMFXTFNTPAMYVAIQA 510
N + M +IMF TFN+PAMYVAIQA
Sbjct: 78 NWDDMEKIMFETFNSPAMYVAIQA 101
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 95.9 bits (228), Expect = 2e-20
Identities = 44/99 (44%), Positives = 63/99 (63%), Gaps = 1/99 (1%)
Frame = +1
Query: 217 SGRDGRYGTEGLFVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTF-YNELRVAPE 393
S + G + L VGDEA R +L + YP+++GIV NWDDM+ +W +TF +++ + P
Sbjct: 44 SQKVGDIEVKDLMVGDEASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPR 103
Query: 394 EHPVLLTEAPLNPKANREXMTQIMFXTFNTPAMYVAIQA 510
VLLTE PLNP NRE M ++MF + +Y+AIQA
Sbjct: 104 NTKVLLTEPPLNPMKNREKMIEVMFENYQFEGVYIAIQA 142
Score = 53.2 bits (122), Expect = 2e-07
Identities = 21/33 (63%), Positives = 28/33 (84%)
Frame = +3
Query: 507 SVLSLYASGRXTGIVLDSGDGVSHTVPIYEGYA 605
+VL+LYA G TG+V+DSGDGV+H P+YEG+A
Sbjct: 142 AVLTLYAQGLLTGVVIDSGDGVTHICPVYEGFA 174
Score = 44.4 bits (100), Expect = 7e-05
Identities = 17/33 (51%), Positives = 24/33 (72%)
Frame = +2
Query: 113 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 211
+ +V DNG+G K G+AG + P +FPS+VGRP
Sbjct: 7 SVIVCDNGTGFVKCGYAGSNFPAHIFPSMVGRP 39
>SB_54| Best HMM Match : Actin (HMM E-Value=0)
Length = 2486
Score = 80.2 bits (189), Expect = 1e-15
Identities = 36/55 (65%), Positives = 43/55 (78%)
Frame = +1
Query: 346 KIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREXMTQIMFXTFNTPAMYVAIQA 510
K+W H F ++LRV E+ PVLLTEAPLNPK NRE M Q+MF +FN P MYVA+QA
Sbjct: 2130 KMWEHAF-DQLRVRGEDFPVLLTEAPLNPKMNRERMVQLMFESFNVPCMYVAVQA 2183
Score = 59.7 bits (138), Expect = 2e-09
Identities = 23/34 (67%), Positives = 30/34 (88%)
Frame = +2
Query: 119 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 220
+V+DNGSG CKAG + D++PR VFP+IVGRPRH+
Sbjct: 2097 VVIDNGSGFCKAGLSTDESPRVVFPAIVGRPRHK 2130
Score = 56.8 bits (131), Expect = 1e-08
Identities = 23/32 (71%), Positives = 28/32 (87%)
Frame = +3
Query: 507 SVLSLYASGRXTGIVLDSGDGVSHTVPIYEGY 602
+V++LYASGR TG V D GDGVSHTVP+Y+GY
Sbjct: 2183 AVMALYASGRTTGTVFDCGDGVSHTVPVYDGY 2214
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 63.7 bits (148), Expect = 1e-10
Identities = 28/33 (84%), Positives = 30/33 (90%)
Frame = +3
Query: 507 SVLSLYASGRXTGIVLDSGDGVSHTVPIYEGYA 605
+VLSLYASGR TG+V DSGDGVSH VPIYEGYA
Sbjct: 17 AVLSLYASGRTTGVVFDSGDGVSHNVPIYEGYA 49
Score = 31.1 bits (67), Expect = 0.72
Identities = 13/17 (76%), Positives = 15/17 (88%)
Frame = +1
Query: 460 IMFXTFNTPAMYVAIQA 510
IMF FN+PA+YVAIQA
Sbjct: 1 IMFEAFNSPAVYVAIQA 17
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 61.7 bits (143), Expect = 4e-10
Identities = 26/33 (78%), Positives = 32/33 (96%)
Frame = +3
Query: 507 SVLSLYASGRXTGIVLDSGDGVSHTVPIYEGYA 605
+VLSLYA+GR TG+VLD+GDGVSH+VPIYEG+A
Sbjct: 164 AVLSLYATGRTTGVVLDAGDGVSHSVPIYEGFA 196
Score = 60.1 bits (139), Expect = 1e-09
Identities = 23/39 (58%), Positives = 32/39 (82%)
Frame = +1
Query: 394 EHPVLLTEAPLNPKANREXMTQIMFXTFNTPAMYVAIQA 510
+HPVLLTEAPLNP+ NRE ++ F TFN PA+++++QA
Sbjct: 126 QHPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQA 164
>SB_34957| Best HMM Match : PARP (HMM E-Value=4.4e-12)
Length = 1392
Score = 59.7 bits (138), Expect = 2e-09
Identities = 27/39 (69%), Positives = 29/39 (74%)
Frame = +2
Query: 104 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQ 220
E LV+D GS M K GFAGDDAP+ VFP IVGRPRHQ
Sbjct: 1354 EAPTPLVIDVGSHMWKVGFAGDDAPKGVFPPIVGRPRHQ 1392
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 56.4 bits (130), Expect = 2e-08
Identities = 22/65 (33%), Positives = 40/65 (61%)
Frame = +1
Query: 304 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREXMTQIMFXTFNT 483
PI+ G++ +WD EKI + + ++ HP+L++EA N + RE +T++MF +N
Sbjct: 3 PIKDGMIEDWDLFEKILDYIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNV 62
Query: 484 PAMYV 498
PA ++
Sbjct: 63 PAFFL 67
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/32 (46%), Positives = 24/32 (75%)
Frame = +3
Query: 507 SVLSLYASGRXTGIVLDSGDGVSHTVPIYEGY 602
SVL+ +A+GR G+V+DSG + VP+++GY
Sbjct: 71 SVLTAFANGRSNGLVIDSGATQTSAVPVHDGY 102
>SB_43920| Best HMM Match : SRP-alpha_N (HMM E-Value=4.6)
Length = 372
Score = 56.0 bits (129), Expect = 2e-08
Identities = 30/66 (45%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +1
Query: 220 GRDGRYGTEGL--FVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPE 393
GR + G E L F+GDEA K T K+PI H IV +WD ME+ W + LR PE
Sbjct: 273 GRSAK-GVEDLDFFIGDEAIDKPSYAT-KWPIRHAIVEDWDLMERFWEQCIFKYLRAEPE 330
Query: 394 EHPVLL 411
+H LL
Sbjct: 331 DHYFLL 336
Score = 32.3 bits (70), Expect = 0.31
Identities = 11/17 (64%), Positives = 15/17 (88%)
Frame = +3
Query: 540 TGIVLDSGDGVSHTVPI 590
TG V+DSGDGV+H +P+
Sbjct: 356 TGCVIDSGDGVTHVIPV 372
>SB_49385| Best HMM Match : Actin (HMM E-Value=0.00022)
Length = 921
Score = 51.2 bits (117), Expect = 6e-07
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +2
Query: 89 FKMCDEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVG 235
FK+ A+V+DNG G+ K GFAGD PR + P++VG P+ +++G
Sbjct: 693 FKLDSHYNRAIVLDNGCGISKIGFAGDRVPRIIQPAVVGNPQRFSMLIG 741
Score = 32.7 bits (71), Expect = 0.24
Identities = 15/30 (50%), Positives = 18/30 (60%)
Frame = +3
Query: 513 LSLYASGRXTGIVLDSGDGVSHTVPIYEGY 602
LSLYASG G+ L SG + IYEG+
Sbjct: 770 LSLYASGMTLGVCLSSGFSCTQAAVIYEGH 799
>SB_13343| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 198
Score = 41.9 bits (94), Expect = 4e-04
Identities = 21/39 (53%), Positives = 27/39 (69%)
Frame = -3
Query: 217 MAGPSHDRGEHGARSIISCETGLAHTGAIVYYQRGNFFV 101
MA + D GE+G+ SI+S ETGLAHTGAI+ Q + V
Sbjct: 1 MARSADDGGENGSGSIVSGETGLAHTGAIIDNQSCDIIV 39
>SB_38756| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 220
Score = 39.1 bits (87), Expect = 0.003
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 3/79 (3%)
Frame = +1
Query: 220 GRDGRYGTEGLFVGDEAQSKRGIL-TLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAP-- 390
GR G + GL VG++ S I L+ P + +VT+++ E++ H F + P
Sbjct: 105 GRKGEPDSGGLAVGNDIGSVEMIRWALRTPFDRDVVTHYECQEQVLDHAFSHLGINTPGG 164
Query: 391 EEHPVLLTEAPLNPKANRE 447
HPV++TE NP R+
Sbjct: 165 VNHPVIMTEPVCNPNYCRQ 183
>SB_26136| Best HMM Match : Actin (HMM E-Value=7.2e-10)
Length = 543
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +3
Query: 540 TGIVLDSGDGVSHTVPIYEGY 602
TG V+DSGDGV+H +P+ EGY
Sbjct: 62 TGCVIDSGDGVTHVIPVAEGY 82
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 37.1 bits (82), Expect = 0.011
Identities = 16/44 (36%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +1
Query: 250 LFVGDEAQSKRGILTLKY--PIEHGIVTNWDDMEKIWHHTFYNE 375
LF+GD+ + + L Y P + G + NWD ++IW +TF E
Sbjct: 272 LFIGDQIEECKDYSALFYVLPFQKGFLVNWDVEKQIWDYTFGKE 315
Score = 27.9 bits (59), Expect = 6.7
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +2
Query: 107 EVAALVVDNGSGMCKAGFAGDDAPRAV 187
++A LV+D G+ K GFA + APR++
Sbjct: 232 KMATLVLDCGACSQKIGFASNQAPRSI 258
>SB_18097| Best HMM Match : NadA (HMM E-Value=2.2)
Length = 272
Score = 33.5 bits (73), Expect = 0.14
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 140
L C +++ V+LSH + H M D +HG RS SCET L T
Sbjct: 213 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVPT 259
>SB_47621| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 591
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 140
L C +++ V+LSH + H M D +HG RS SCET L T
Sbjct: 408 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 454
>SB_21074| Best HMM Match : NadA (HMM E-Value=2)
Length = 358
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 140
L C +++ V+LSH + H M D +HG RS SCET L T
Sbjct: 271 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 317
>SB_15522| Best HMM Match : DUF590 (HMM E-Value=5.8)
Length = 339
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 140
L C +++ V+LSH + H M D +HG RS SCET L T
Sbjct: 249 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 295
>SB_38460| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 181
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 140
L C +++ V+LSH + H M D +HG RS SCET L T
Sbjct: 91 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_38372| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 402
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 140
L C +++ V+LSH + H M D +HG RS SCET L T
Sbjct: 91 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 137
>SB_2458| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 458
Score = 33.1 bits (72), Expect = 0.18
Identities = 19/48 (39%), Positives = 25/48 (52%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 140
L C +++ V+LSH + H M D +HG RS SCET L T
Sbjct: 125 LTCICCKVMEHVVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 171
>SB_4310| Best HMM Match : RVT_1 (HMM E-Value=5e-28)
Length = 570
Score = 32.7 bits (71), Expect = 0.24
Identities = 18/48 (37%), Positives = 25/48 (52%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 140
L C +++ ++LSH + H M D +HG RS SCET L T
Sbjct: 173 LTCICCKVMEHIVLSHLNSHTAMNNILSDL-QHGFRSGFSCETQLVLT 219
>SB_37540| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 31.5 bits (68), Expect = 0.55
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 192 GNTARGASSPAKPALHIPEPLSTT 121
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_5400| Best HMM Match : DUF1153 (HMM E-Value=7.8)
Length = 170
Score = 31.5 bits (68), Expect = 0.55
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -1
Query: 192 GNTARGASSPAKPALHIPEPLSTT 121
GNT R PAKPAL++P P S T
Sbjct: 80 GNTNRRTRIPAKPALNLPSPPSKT 103
>SB_56449| Best HMM Match : RVT_1 (HMM E-Value=0.28)
Length = 419
Score = 31.1 bits (67), Expect = 0.72
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 140
L C +++ ++LSH + H L A +HG R +SCET L T
Sbjct: 242 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 288
>SB_2746| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 31.1 bits (67), Expect = 0.72
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 140
L C +++ ++LSH + H L A +HG R +SCET L T
Sbjct: 103 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 149
>SB_2102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2396
Score = 31.1 bits (67), Expect = 0.72
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 140
L C +++ ++LSH + H L A +HG R +SCET L T
Sbjct: 1641 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 1687
>SB_55880| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 859
Score = 31.1 bits (67), Expect = 0.72
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 140
L C +++ ++LSH + H L A +HG R +SCET L T
Sbjct: 669 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 715
>SB_24270| Best HMM Match : DUF1604 (HMM E-Value=5.2)
Length = 329
Score = 31.1 bits (67), Expect = 0.72
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 140
L C +++ ++LSH + H L A +HG R +SCET L T
Sbjct: 224 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 270
>SB_11764| Best HMM Match : DSHCT (HMM E-Value=1.9e-27)
Length = 1492
Score = 31.1 bits (67), Expect = 0.72
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 140
L C +++ ++LSH + H L A +HG R +SCET L T
Sbjct: 1079 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 1125
>SB_10927| Best HMM Match : RVT_1 (HMM E-Value=6.6e-39)
Length = 452
Score = 31.1 bits (67), Expect = 0.72
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 140
L C +++ ++LSH + H L A +HG R +SCET L T
Sbjct: 22 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 68
>SB_5114| Best HMM Match : RVT_1 (HMM E-Value=1.10002e-42)
Length = 330
Score = 31.1 bits (67), Expect = 0.72
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 140
L C +++ ++LSH + H L A +HG R +SCET L T
Sbjct: 103 LTCICCKIMEHIVLSHLNKH-LAANNILSIFQHGFRQALSCETQLVLT 149
>SB_35780| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 749
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -1
Query: 192 GNTARGASSPAKPALHIPEPLSTT 121
GNT R PAKP+L++P P S T
Sbjct: 540 GNTNRRTRIPAKPSLNLPSPPSKT 563
>SB_36120| Best HMM Match : zf-MIZ (HMM E-Value=3.9)
Length = 209
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRG 113
L C +++ V+LSH + H L A +HG R+ SCET L H A + + G
Sbjct: 93 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHG 151
Query: 112 NFFVAHLE 89
V L+
Sbjct: 152 QVDVLLLD 159
>SB_34116| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 522
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRG 113
L C +++ V+LSH + H L A +HG R+ SCET L H A + + G
Sbjct: 93 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHG 151
Query: 112 NFFVAHLE 89
V L+
Sbjct: 152 QVDVLLLD 159
>SB_15607| Best HMM Match : zf-MIZ (HMM E-Value=3.9)
Length = 221
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRG 113
L C +++ V+LSH + H L A +HG R+ SCET L H A + + G
Sbjct: 126 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHG 184
Query: 112 NFFVAHLE 89
V L+
Sbjct: 185 QVDVLLLD 192
>SB_59500| Best HMM Match : RVT_1 (HMM E-Value=0.015)
Length = 224
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRG 113
L C +++ V+LSH + H L A +HG R+ SCET L H A + + G
Sbjct: 43 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHG 101
Query: 112 NFFVAHLE 89
V L+
Sbjct: 102 QVDVLLLD 109
>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1676
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRG 113
L C +++ V+LSH + H L A +HG R+ SCET L H A + + G
Sbjct: 715 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHG 773
Query: 112 NFFVAHLE 89
V L+
Sbjct: 774 QVDVLLLD 781
>SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1176
Score = 29.5 bits (63), Expect = 2.2
Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRG 113
L C +++ V+LSH + H L A +HG R+ SCET L H A + + G
Sbjct: 799 LTCLACKVMEHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHG 857
Query: 112 NFFVAHLE 89
V L+
Sbjct: 858 QVDVLLLD 865
>SB_42341| Best HMM Match : DUF701 (HMM E-Value=3)
Length = 651
Score = 29.1 bits (62), Expect = 2.9
Identities = 19/80 (23%), Positives = 32/80 (40%)
Frame = +1
Query: 325 TNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREXMTQIMFXTFNTPAMYVAI 504
TN+ + +W H + P V L + + P N E + ++ A+ V
Sbjct: 496 TNFSESRCVWLHKEEQQTTHRPSRQVVTLVDYAVCPFVNHEVLVKVHLLFEERCAVLVG- 554
Query: 505 QACSRCTRPVVXPVSCWTPA 564
+C R RP P+ +PA
Sbjct: 555 GSCRRGCRPRRAPLVALSPA 574
>SB_58989| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 885
Score = 28.7 bits (61), Expect = 3.9
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = -3
Query: 265 HLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 149
H++ + ++SH +HH ++ + +HG R + SCE+ L
Sbjct: 470 HIITKNIVSHLEHHDILY-----KFQHGFRKLRSCESQL 503
>SB_46483| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 149
L C +++ ++LSH + H D +HG RS SCET L
Sbjct: 129 LTCLSCKVMEHIVLSHLNKHLSAFNILSDL-QHGFRSGFSCETQL 172
>SB_35376| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 931
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 149
L C +++ ++LSH + H D +HG RS SCET L
Sbjct: 470 LTCLSCKVMEHIVLSHLNKHLSAFNILSDL-QHGFRSGFSCETQL 513
>SB_31419| Best HMM Match : Laminin_EGF (HMM E-Value=7)
Length = 186
Score = 28.3 bits (60), Expect = 5.1
Identities = 21/91 (23%), Positives = 37/91 (40%), Gaps = 2/91 (2%)
Frame = -2
Query: 398 CSSGATRSSL*KV*CQIFSMSSQLVTIPCSMGYLRVRIPLLLCASS--PTKSPSVPYRPS 225
CS + + C + ++V CS + V + ++C+ P + PS
Sbjct: 88 CSPSRAHVDVFPITCSCRCVPHRMVMSMCSPSRVYVDVSPIVCSCRCVPHRVLMSMCSPS 147
Query: 224 RPDGGAFPRSRGTRREEHHLLRNRPCTYRSH 132
R D FP + R HH+L + + R+H
Sbjct: 148 RADVDVFPITCSRRCVFHHVLMSMCSSSRAH 178
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 28.3 bits (60), Expect = 5.1
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
Frame = -3
Query: 277 CSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL---AHTGAIVYYQRGNF 107
C +++ V+LSH + H L A +HG R+ SCET L H A + + G
Sbjct: 465 CLACKVMKHVVLSHLNKH-LAAHNIISNLQHGFRAGFSCETQLILAVHDWASILNKHGQV 523
Query: 106 FVAHLE 89
V L+
Sbjct: 524 DVLLLD 529
>SB_21844| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 411
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 149
L C +++ ++LSH + H D +HG RS SCET L
Sbjct: 78 LTCLSCKVMEHIVLSHLNKHLSAFNILSDL-QHGFRSGFSCETQL 121
>SB_20462| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 130
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = -1
Query: 192 GNTARGASSPAKPALHIPEPLSTT 121
GNT R AKPAL++P P S T
Sbjct: 40 GNTNRRTRIQAKPALNLPSPPSKT 63
>SB_11603| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 635
Score = 28.3 bits (60), Expect = 5.1
Identities = 13/24 (54%), Positives = 14/24 (58%)
Frame = -1
Query: 192 GNTARGASSPAKPALHIPEPLSTT 121
GNT R PAKP L IP P + T
Sbjct: 68 GNTNRRTRIPAKPTLTIPSPPTKT 91
>SB_52464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2529
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 149
L C +++ ++LSH + H D +HG RS SCET L
Sbjct: 1196 LTCLSCKVMEHIVLSHLNKHLSAFNILSDL-QHGFRSGFSCETQL 1239
>SB_36891| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2124
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 149
L C +++ ++LSH + H D +HG RS SCET L
Sbjct: 1860 LTCLSCKVMEHIVLSHLNKHLSAFNILSDL-QHGFRSGFSCETQL 1903
>SB_30407| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 788
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 149
L C +++ ++LSH + H D +HG RS SCET L
Sbjct: 180 LTCLSCKVMEHIVLSHLNKHLSAFNILSDL-QHGFRSGFSCETQL 223
>SB_19106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 149
L C +++ ++LSH + H D +HG RS SCET L
Sbjct: 70 LTCLSCKVMEHIVLSHLNKHLSAFNILSDL-QHGFRSGFSCETQL 113
>SB_12274| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 295
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 149
L C +++ ++LSH + H D +HG RS SCET L
Sbjct: 148 LTCLSCKVMEHIVLSHLNKHLSAFNILSDL-QHGFRSGFSCETQL 191
>SB_11572| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 888
Score = 28.3 bits (60), Expect = 5.1
Identities = 16/45 (35%), Positives = 23/45 (51%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 149
L C +++ ++LSH + H D +HG RS SCET L
Sbjct: 209 LTCLSCKVMEHIVLSHLNKHLSAFNILSDL-QHGFRSGFSCETQL 252
>SB_43973| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3142
Score = 27.9 bits (59), Expect = 6.7
Identities = 16/48 (33%), Positives = 23/48 (47%)
Frame = -3
Query: 283 LFCSVPHLLQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGLAHT 140
L C ++ ++LSH + H L +HG R +SCET L T
Sbjct: 854 LTCLCCKTMEHIVLSHLNKH-LSRFNILSNAQHGFRQGLSCETQLVLT 900
>SB_40186| Best HMM Match : Extensin_2 (HMM E-Value=0.0036)
Length = 362
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 317 PCSMGYLRVRIPLLLCASSPTKSPSVPY 234
P ++ +L PLL+ +SP SP++P+
Sbjct: 16 PPTIPFLAATTPLLMVTTSPLTSPTIPF 43
Score = 27.9 bits (59), Expect = 6.7
Identities = 10/28 (35%), Positives = 18/28 (64%)
Frame = -2
Query: 317 PCSMGYLRVRIPLLLCASSPTKSPSVPY 234
P ++ +L PLL+ +SP SP++P+
Sbjct: 82 PPTIPFLATTTPLLMVTTSPLPSPTIPF 109
>SB_22432| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 285
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/37 (32%), Positives = 21/37 (56%)
Frame = -1
Query: 207 LPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSSH 97
L IE + A++P P + +P+ + +AAT +SH
Sbjct: 222 LRRIERSNIPQATAPGTPGVPVPQAVHGVSAATQASH 258
>SB_28762| Best HMM Match : RVT_1 (HMM E-Value=3.9e-23)
Length = 409
Score = 27.5 bits (58), Expect = 8.9
Identities = 15/37 (40%), Positives = 21/37 (56%)
Frame = -3
Query: 259 LQRVLLSHTDHHALMAGPSHDRGEHGARSIISCETGL 149
++ ++LSH + H L A +HG RS SCET L
Sbjct: 1 MEHIVLSHLNKH-LSAFNILSEMQHGFRSGFSCETQL 36
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,221,024
Number of Sequences: 59808
Number of extensions: 456872
Number of successful extensions: 1455
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 1233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1451
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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