Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20017
         (560 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC6B1.05c |||ubiquitin-like conjugating enzyme|Schizosaccharom...    28   0.82 
SPAC3H8.06 |aur1||inositol phosphorylceramide synthase |Schizosa...    27   1.9  
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ...    27   1.9  
SPBC1348.07 |||S. pombe specific DUF999 protein family 6|Schizos...    25   5.8  
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    25   7.6  
SPAC977.06 |||S. pombe specific DUF999 family protein 3|Schizosa...    25   7.6  
SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces pom...    25   7.6  
SPBPB2B2.07c |||S. pombe specific DUF999 protein family 7|Schizo...    25   7.6  
SPBPB2B2.14c |||S. pombe specific DUF999 protein family 8|Schizo...    25   7.6  

>SPBC6B1.05c |||ubiquitin-like conjugating
           enzyme|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 649

 Score = 28.3 bits (60), Expect = 0.82
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = +2

Query: 314 WSVAVEKAISDCVDKDLRQYL 376
           W++A  K +S CVDK L+ YL
Sbjct: 193 WTIAPLKELSHCVDKSLQFYL 213


>SPAC3H8.06 |aur1||inositol phosphorylceramide synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 422

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 14/48 (29%), Positives = 24/48 (50%)
 Frame = -3

Query: 303 SFAHCRRCVLYASLIRACFQLKSPTFRKRIECPCKVQAALGWNILREV 160
           S+ H +   L  +LI AC  ++SP F  +    C +  AL   + R++
Sbjct: 41  SWTHLQYVFLAGNLIFACIVIESPGFWGKFGIACLLAIALTVPLTRQI 88


>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
           Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1006

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = +2

Query: 188 AAWTLQGHSMRFRKVGLFN*KQALIKEAYKTHLRQWAKEHEGW 316
           AAW + G   R R  G  N ++ LI      HL+   K+HE W
Sbjct: 168 AAWKMLGECHRQRGNGRVNIEKCLIAWMAAAHLK--PKDHELW 208


>SPBC1348.07 |||S. pombe specific DUF999 protein family
           6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.4 bits (53), Expect = 5.8
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 414 PESLC*RNVPTNIGPAERNHSNNSIVTIEFFLINEFTISAK 536
           PE +  +N+ TNI   +++  N     I+FFL N FT  +K
Sbjct: 19  PEKVNKQNLFTNIVKPQKDKINIKTDKIKFFLNNLFTEFSK 59


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +2

Query: 266 EAYKTHLRQWAKEHEGWSVAVEKAISDCVDKDLRQYLEFP 385
           E  K H+ +W   +      +EK I   VD+++R   E P
Sbjct: 335 EGLKKHIMEWGVANANELKNIEKRIRGMVDEEVRIAEESP 374


>SPAC977.06 |||S. pombe specific DUF999 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 189

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 414 PESLC*RNVPTNIGPAERNHSNNSIVTIEFFLINEFTISAK 536
           PE +  +N+ TNI   +++  N     I+FFL N FT  +K
Sbjct: 19  PEKVNKQNLFTNIIKPQKDKINIKTDKIKFFLNNLFTEFSK 59


>SPBC354.14c |vac8||vacuolar protein Vac8|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 474 SDSFQQVQCSLGHFFNIAIPVHVNTS*ALQGNSRYCLRSLST 349
           SD F+    + G   N+ IP+  + S  +QGNS   L +LS+
Sbjct: 406 SDEFKSYLLNFG-ICNVLIPLTDSMSIEVQGNSAAALGNLSS 446


>SPBPB2B2.07c |||S. pombe specific DUF999 protein family
           7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 165

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 414 PESLC*RNVPTNIGPAERNHSNNSIVTIEFFLINEFTISAK 536
           PE +  +N+ TNI   +++  N     I+FFL N FT  +K
Sbjct: 39  PEKVNKQNLFTNIIKPQKDKINIKTDKIKFFLNNLFTEFSK 79


>SPBPB2B2.14c |||S. pombe specific DUF999 protein family
           8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 230

 Score = 25.0 bits (52), Expect = 7.6
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 414 PESLC*RNVPTNIGPAERNHSNNSIVTIEFFLINEFTISAK 536
           PE +  +N+ TNI   +++  N     I+FFL N FT  +K
Sbjct: 19  PEKVNKQNLFTNIIKPQKDKINIKTDKIKFFLDNLFTEFSK 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,276,346
Number of Sequences: 5004
Number of extensions: 47370
Number of successful extensions: 114
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 236012634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)