Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbS20017
         (560 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC016138-1|AAH16138.1|  132|Homo sapiens FAM120C protein protein.      30   6.4  
AY121803-1|AAM82751.1|  132|Homo sapiens BJ-HCC-21 tumor antigen...    30   6.4  
AK000513-1|BAA91219.1|  132|Homo sapiens protein ( Homo sapiens ...    30   6.4  
BC129994-1|AAI29995.1| 1232|Homo sapiens TBC1 domain family, mem...    29   8.5  
BC080659-1|AAH80659.1|  599|Homo sapiens TBC1D9B protein protein.      29   8.5  
BC008919-1|AAH08919.3|  510|Homo sapiens TBC1D9B protein protein.      29   8.5  
BC000701-1|AAH00701.1|  391|Homo sapiens TBC1D9B protein protein.      29   8.5  
AK223509-1|BAD97229.1|  429|Homo sapiens KIAA0676 protein (Fragm...    29   8.5  
AB014576-1|BAA31651.1| 1262|Homo sapiens KIAA0676 protein protein.     29   8.5  

>BC016138-1|AAH16138.1|  132|Homo sapiens FAM120C protein protein.
          Length = 132

 Score = 29.9 bits (64), Expect = 6.4
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +3

Query: 138 IPELGNPEPLAECSNPKLPG--PCKDIQCVFEK 230
           +P  G PEPL E S   LPG   C  + C  E+
Sbjct: 71  VPATGLPEPLREASTHPLPGQASCHVVSCPMER 103


>AY121803-1|AAM82751.1|  132|Homo sapiens BJ-HCC-21 tumor antigen
           protein.
          Length = 132

 Score = 29.9 bits (64), Expect = 6.4
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +3

Query: 138 IPELGNPEPLAECSNPKLPG--PCKDIQCVFEK 230
           +P  G PEPL E S   LPG   C  + C  E+
Sbjct: 71  VPATGLPEPLREASTHPLPGQASCHVVSCPMER 103


>AK000513-1|BAA91219.1|  132|Homo sapiens protein ( Homo sapiens
           cDNA FLJ20506 fis, clone KAT09493. ).
          Length = 132

 Score = 29.9 bits (64), Expect = 6.4
 Identities = 14/33 (42%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
 Frame = +3

Query: 138 IPELGNPEPLAECSNPKLPG--PCKDIQCVFEK 230
           +P  G PEPL E S   LPG   C  + C  E+
Sbjct: 71  VPATGLPEPLREASTHPLPGQASCHVVSCPMER 103


>BC129994-1|AAI29995.1| 1232|Homo sapiens TBC1 domain family, member
            9B (with GRAM domain) protein.
          Length = 1232

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 272  YKTHLRQWAKEHEGWSVAVEKAISDCVDKDLRQYLEFPCSAYDVFT 409
            Y+ +LR WAKE E    A ++ I D    +  Q++E   + Y++F+
Sbjct: 980  YRHYLRMWAKEKE----AQKETIKDLPKMNQEQFIELCKTLYNMFS 1021


>BC080659-1|AAH80659.1|  599|Homo sapiens TBC1D9B protein protein.
          Length = 599

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 272 YKTHLRQWAKEHEGWSVAVEKAISDCVDKDLRQYLEFPCSAYDVFT 409
           Y+ +LR WAKE E    A ++ I D    +  Q++E   + Y++F+
Sbjct: 347 YRHYLRMWAKEKE----AQKETIKDLPKMNQEQFIELCKTLYNMFS 388


>BC008919-1|AAH08919.3|  510|Homo sapiens TBC1D9B protein protein.
          Length = 510

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 272 YKTHLRQWAKEHEGWSVAVEKAISDCVDKDLRQYLEFPCSAYDVFT 409
           Y+ +LR WAKE E    A ++ I D    +  Q++E   + Y++F+
Sbjct: 258 YRHYLRMWAKEKE----AQKETIKDLPKMNQEQFIELCKTLYNMFS 299


>BC000701-1|AAH00701.1|  391|Homo sapiens TBC1D9B protein protein.
          Length = 391

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 272 YKTHLRQWAKEHEGWSVAVEKAISDCVDKDLRQYLEFPCSAYDVFT 409
           Y+ +LR WAKE E    A ++ I D    +  Q++E   + Y++F+
Sbjct: 139 YRHYLRMWAKEKE----AQKETIKDLPKMNQEQFIELCKTLYNMFS 180


>AK223509-1|BAD97229.1|  429|Homo sapiens KIAA0676 protein
           (Fragment) variant protein.
          Length = 429

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 272 YKTHLRQWAKEHEGWSVAVEKAISDCVDKDLRQYLEFPCSAYDVFT 409
           Y+ +LR WAKE E    A ++ I D    +  Q++E   + Y++F+
Sbjct: 177 YRHYLRMWAKEKE----AQKETIKDLPKMNQEQFIELCKTLYNMFS 218


>AB014576-1|BAA31651.1| 1262|Homo sapiens KIAA0676 protein protein.
          Length = 1262

 Score = 29.5 bits (63), Expect = 8.5
 Identities = 15/46 (32%), Positives = 26/46 (56%)
 Frame = +2

Query: 272  YKTHLRQWAKEHEGWSVAVEKAISDCVDKDLRQYLEFPCSAYDVFT 409
            Y+ +LR WAKE E    A ++ I D    +  Q++E   + Y++F+
Sbjct: 1010 YRHYLRMWAKEKE----AQKETIKDLPKMNQEQFIELCKTLYNMFS 1051


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 79,071,089
Number of Sequences: 237096
Number of extensions: 1754192
Number of successful extensions: 5109
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5109
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5646880600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)